Detail information of GLYMA_10G052200_circ_ig.1


General Information
CircRNA Name GLYMA_10G052200_circ_ig.1
ID in PlantcircBase gma_circ_006549
Alias gma-circRNA1442
Organism Glycine max
Position chr10: 4683614-4688162  JBrowse»
Reference genome v2.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_10G052200_circ_ig.2 GLYMA_10G052200_circ_ig.3 GLYMA_10G052200_circ_ig.4 GLYMA_10G052200_circ_ig.5 GLYMA_10G052200_circ_ig.6 GLYMA_10G052200_circ_ig.7
Support reads NA
Tissues flower bud
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGAAACGGAGCAAAGAGGGCAATTGCTAGGCCTGCGTACCTGCGAGACTATGTGTGAGGATGC
TGAGTGGGCTTAAGGGATCATCTACAGGGTTGTTGTctctagcttctccttcttcttcttcata
ggaggttatggtcctcgaaaccagagtagcttgcccctaacatttggtgctctcgtcgccatgc
ctgatcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTAGCTTCTCCTTCTTCTTCTTCATAGGAGGTTATGGTCCTCGAAACCAGAGTAGCTTGCCC
CTAACATTTGGTGCTCTCGTCGCCATGCCTGATCCTCCCCCCAACCCCCTTGAAGTTGCCCTCC
TCAAACTTACTAACCTCCATGCTTCCTTGGGTGAAACCGTTCAAAGCATGGCTCAGAAGTTTGA
TGCCCTCTTGCTGCGCTCTCCATCTTCCCCTTCGTCCTCATCCCCAAACCCGAGCACACCTTAT
TTTCCCTTTGTCCCTGCATCACAACACAAAATGAAACTCGACATTTCCAAGTTTGATGGCACTG
ACCCTTACGGGTGGGTGTTTAAAATCAATCAATATTTTCAATACCACGCGACTCCCGAGCACGA
TCGACTTACCATTGTTTCCTTCTATATGGATGGCCGTGCTCTTGCATGGTTCCAGTGGATGGCT
AACAATGGCCAATTCACGTCGTGCCCTGCATTCGTCCAAGCCCTTCAGACTCGCTTTGCCCCTT
CTCACTACGACGACCCCACAGGCTCCCTTTTCAAATTGCAGCAGACCGGCACGGTGGCCCAATA
TCTTTCGAACTTTGAGGATTTAGCTAACCGAATTGTTGGGCTTCCCCCTCAATTCCTCCTCAGC
TGCTTCATATCAGGATTATCGCCCGATGTTCGCCGTGAAGTGCAGGCTCGCCTCTAAGAAGAGA
AGCTTCTTGATGCGCGACCCTCCCTTCGCACTCGTGCTCCATCGGTTGTGCCTCTCTCGCTGCG
TCCGACGGCCACCCCTGCCTTGCTTCCTCTTCCCACTTCACGCCCACCGCCACCACGTTTACCC
GCCACGTTGAAGAGACTCTCATCGGAGGAAATTAGCTCCCGCAGAGAACGGGGCCTCTGTTTTA
ATTGCGACGAGAAGTACCATAGAGGCCACCGTTGTACCTCTAGGGTTTTCTTCTTGGTCGCGGA
GGAAGATGAAGTTGTTGACTCTCATATAGGGGAAATTGACCCGAGCCCCGACCCACCCGAGATC
CACGACCCGGGCCCGACCCAAATTAGTTTTAATTCCCTTGCGGGCCAGCTCGCCCTGGAAACGC
TGCGTTTGATTGGCACGGTTGCCGGCACCACCGTAGTCGTCCTGGTGGACGGTGGGAGCACCCA
CTATTTCATTCAGGAGTCCCTCGTCACTCAACTTGGCCTCCAAACTCAGCCCACAACCCCACTT
CGTGTAATGATTGGTAACGACCAACATTTGGCTTGTGATCGTCTCTGCCCTGACCTCTCCCTCA
CCATGCAACAATTCCATTGTGTGGTGGACCTGTTTGTGCTTCCAATTGCAGGTGGGAATGTCGT
TTTAGGTGTGCAATGGTTGAAGATGCTCGGCCCAGTCCTCACCGATTATAACACTATGAGCATG
AAGTTCTTTTCAGGAGTCCACCTTGACGATGCTGACACCACATCAATTTCGCCGGTTATCTCGC
AACTCCGACACTAGCTCCTTCTTCCATATTGCAGTCCTCGCTGAGACACCGTTACCTGACTCCA
GTTCACCCCTGCACCCCGCAATTCAGGACTTGGTGGACCATTTTGCTATTCTGTTTCAACCCCC
CACCGCGCTTCCACCGAAGAGAATCACTGACCATCACATTCACTTAATTCCACAAGCTACCCCA
GTGAAGGTGCGTCCCTATCGGTACCCTCACTTTCAGAAACGTGAGATTGAGCTCCAGGTCGAGT
CCATGCTTCAGAAGGGCCTCATCCGTCCCAGTACGAGCCCTTTCTCCTTCCCTGTGCTCCTCAC
GAAGAAGCAATCATGGTGGTTTTGCGTGGATTATCGCGCCCTGAACGTCGTGACTGTCCGTGAC
CGCTTTCCAATTCCCACCATCGACGAGCTCCTGGATGAACTGGGTAAGGCTTGTTGTTTTTCGA
AATTAGACTTGTTGCAGGGCTATCATCAAATCAGGATGCATTCCTCCAATATTGCCAAGACAGC
ATTTCGCACTCACCATGGGCATTACGAATTCAAGGTAATGCCTTTTGGTTTATGCAATGCTCCC
TCATCATTTCAGGCAACCATGAATATGATCTTCAGACCATTCCTTCGTCGATTCCTGATCGTCT
TCTTCGACGATATACTTATATACAGCGCTACACTTAAGGAACATGTCACACATGTGCAACAAGC
TTTTCAGGTCCTTTTGGATAATCATTTTGTCCTTAAATTATCTAAATGTTCATTCGCACAGCAA
CAGGTGGAATATCTCGGGCACATGGTCTCGGAGAGGGGAGTGGAACCAGTAGCAGCCAAGGTAG
AAGCAGTCCGGCAATGGCCAGTTCCCCACTCCATTAAAGCTTTACGAAGCTTTCTGGGCCTTGC
GGGCTTCTGTAGGAGATTTATTAAGGGGTATGCTTCGATAGCTGCCCCGTTGGTGGCAGCAACC
ACGGTGGAGCCTTTTCAGTGGACCGCGGCGGCTCAGCTCGCATTTGAACTTTTAAAGAAAGCCT
TGTCTGCTCTGGTACTTGCCTTGCCGGATTTCCAATTGCCATTTATGGTCGAGACCGATGCTTC
CGGGGTGGGCATGGGTGTCATCCTCTCCCAGCAGGGGCACCCAATTGCATACTTTAGCAAGCCA
GTCCCACCTAAGCTCCAACACTCGTCCACTTATGTCCGAGAATTATTCGCTGTGACGGCAACAG
TCAAGAAATGGAGGCAATACCTCCTCGGAAACCGTTTCATCATCCTTATTGATCATCGCAGCTT
AGGAACTCCTTACACAAGTTATTCAGACCCCAGAGCAACATATGTACCTTGCTCGGTTGATGGG
GTACGATTACCAAATTCAATTTCGTTCCGGCGCTTCCAATCAAGCTGCAGACGCCCTATCTCGA
TTACTTGAACACTCCACCTCTCTGTTGCTTACTCTGTCGGTGCCCTGCTTAACGTTTATGGAGG
AATTGCGAGCACAATTAGCTCAGAACCAGCTTTACCAAGATAGACTTCAGGCGATTAGATCCTT
TCCAACCAAGTACCCCGAGCTCACTATAACCAATGGCTTGATACTTAAACGAGACCGTATTTGG
TTACCATTGATCCCCACTCTTCTTCGAGAGTATCATGCCACGCTGACAGGCGGCCACTTGGGCA
TCGCGAAGACCATTGCTCGCGTAATGGATAACTTCAATTGGGAAGGGTTACGTGAAGATGTTTC
CCAATTTGTTCAAAGTTGCGTGGATTGCCAATATGCTAAATAGAGACAAAGAGAGTGGCGGGCT
TGCTGTGTCCTCTTCCGGTGCCACATCGGCCGTGGGAGGACCTCTCATTGGACTTCATTATGGG
GCTACCTTCATTTCAGGGAAATACGGTTACTCTCGTTGTGGTTGACCGTTTCTCAAAGGGTATC
CACCTGGGGATGCTGCCGACATCACACACGGCCCACGCGGTAGCCTGTTTGTTCATGAACATCG
TCGAAAAAATCCACGGCCTTCCACGCAGTCTGGTTTCTGACCGAGACCCGCTCTTCATCAGCAG
GTTTTGGCAAGAATTATTTCGCCTAAGTGGAACACAGCTTCGTCTCAGCTCTGTGTATCACCCA
CAGAGCGATGGACAAACTGAAGTTCTTAATCGAGTGATTGAGCAATATCTTCGCTCCTTCGTGC
ATCGCCGGTCGGGATCATGGGGCAAGCTATTACTGTGGGTGGAATGGTCCCACAATACAACGTG
GAACGCGGCCACGGGGTCTACACCCTATGAAGTCACCTTTGGGAGGAAGCCTTTCAATTTTCCG
GAGTATCTCACGGGTACTTCCAAGGTGGACGCAGTGGATGAAATGTTGACCAACCGCGAAGAAA
CCTTCTTGCTCATCCGCAAGAAGCTGCTAAAAGCTCAAGAGCTTATGAAGAAGTACGTTGATCA
CAAGCGCCGGGAGGTGGTCTATCAACCAGGGGAGTGGGTGATGATCAAATTGAGGCCACGAAGG
CAAATTTCGGCTAAACCGCAATTGGGCTCTTCCGGGAAATTGTCGAAGCGCTATTATGGCCCAT
TTCAGGTGGTGAATCGCGTGGGGCCCGTAGCTTATCGTTTGAAACTCCCCGAAGGCACCAACAT
TCATCCAATATTCCATTGTTCCATTTTGAAGCCCTTTAAGGGATCACCGGAAGTAGCGAACTCA
GCCCCATTACCTGATCAAGTTGTGAATAACCAACCTTTGATAACCCCCCTTTAGCAATTCGGGA
TTACCGCAAGGCGTCAGAGGGAGAAGAGACTTACTGGGAAGTTTTCGTGCAGTGGACAGGACTA
CCCCCGGAGGAGACTTCATGGGAACGCTAGACTCAATTAGCTGAGGAATATCACCTTGAGGACA
AGGTGCATTTGCATGGGCCGTGGAATGATAGACGAACAGGGGTACAACAAGTAATAGATGAGGA
ACCCAGCAAACACACTAACAACAAGGTGCAATTAGGAAACGGAGCAAAGAGGGCAATTGCTAGG
CCTGCGTACCTGCGAGACTATGTGTGAGGATGCTGAGTGGGCTTAAGGGATCATCTACAGGGTT
GTTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.436138651
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018