Detail information of BGIOSGA002495_circ_g.5


General Information
CircRNA Name BGIOSGA002495_circ_g.5
ID in PlantcircBase osi_circ_009341
Alias Chr01:1174460_1175966(MH63RS2), Chr01:1174460_1175966(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1440170-1441676  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA002495
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA002495-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAAGTTAGCAAGATGATTTCTTATTATCTCGCACAACCTACGGAATTCAGTCGTTCTCTTATA
CTGCTTACAAAATTGAAAAGCCTTGTGAGCAGTCATccattttcccaaaatggacagctcccga
taaatggttgactttcatagcaacaaaattgtgtttcacggcatcaacagagatcttctcaaca
acagaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATTTTCCCAAAATGGACAGCTCCCGATAAATGGTTGACTTTCATAGCAACAAAATTGTGTTT
CACGGCATCAACAGAGATCTTCTCAACAACAGAAAAGTCAAAGAATGGGATCATTCTTGAGAGC
ATATCAATTTTCACAGACTGAAATATCTGGGAAGCCTGAAAAAGAACAAAAGGGTGCATAAACC
ACGTGTTAACCAAAGAATAACGTAAAAGATCATGAGAAAAGAGAACTTATACTTCCTGTACAGT
GTGCCATTGAACATACCTGTTGCAACACCCTTAAAGTTGTTAACTTCTCCAAAGCAGGAAGGTA
CTGTGACAGAAAAACTTCTGGAACCGAGGGAGCTGATGAAAGCTTCCCTCCAATCTTTGAAATC
TTAGATAGCAGTGGCTGTGCTTTGGATACGAGATCCAGAGGAAGAAAATCGTGTTCCAAAAGGT
TGTATAAATCTTTGACATCTTGTGAAGCACAGGCAATGACACCTTTGGCAGCCTAAATTTATAA
ATATCAAGTCAAGCGAGCACAAGAAGAGAAATTCAATTATGCATGATAAATGGAGTACAAATTA
CTGGATACAACCCTACCAACCCTATAATACTGACAAAAAGAATTGAATGAACTATCCATGTCAG
CTATCCCATCGACAACTGACGAGAGTGCAAAACTCAACAGAATAGTTTGATAAATAAAAGGACC
CAGGATTCAGCACATACCAGCTCAGAAAAAAGAGATGCTCTTGATGGCTGCAATGGTGACAGGA
GATATGTCAGGAAGATAATAAATAAAATTATTCAAAATATTCTTTGCTTTGAAAAAGATCTGGA
GGGCTAACCACTTCTCTATTCTCACGCTTGGAGTCAAGGGAGAAGTTGACGAGATTAGCTATCC
GCAGATTACGATCTTTCTCATTTTCAAGCTCAAGATGAGATGCGCCATATTTATGGTCATATGG
TGACACGGCAAGTGCAGCAAGCAAAACAGAAGAAGCTATTAATTGAAGGTCCTTCTGAGACAAG
TTCTTATTGTAGCTTTTCTGCAAGTAGAATAGCTTAAGCCATGCATATGCATGATACAAGTGGC
AATCAGATATCCAGAATATTTCAGTCAACTTGGCATAATACACAACCAGGACAGATGGTTTTGG
TGTTTTCTTCACCATGCTCATCAAGCCATGGATGTCTTCCACAGACCTAAAGGCCTCCTGCAAG
AAGCAAAGCTTTACGATCATACAGCAAAGATGATTCACTTGGCATAAAAAAGGTTAAAAAATAT
AAGGAACGGACCTGCCAGAGAGAGAGCTCTGTAGCAATTTTTAGTTGTTCAACTCTAGTGTCCA
GGTATAACTGTAAGCTTTCTGGGGCAGTCAGATCAGGACGATCTCGCTGGTCACGGTATTTGTT
CAAGTTAGCAAGATGATTTCTTATTATCTCGCACAACCTACGGAATTCAGTCGTTCTCTTATAC
TGCTTACAAAATTGAAAAGCCTTGTGAGCAGTCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021