Detail information of AT2G11225_circ_g.2


General Information
CircRNA Name AT2G11225_circ_g.2
ID in PlantcircBase ath_circ_013158
Alias Ath_circ_FC1185
Organism Arabidpsis thaliana
Position chr2: 4479799-4480517  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method find_circ
Parent gene AT2G11225
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 9
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTTATTTCCTCTGCTGAAGGCAATTAAATCAGAGAACGATTCTGTTCAGGAGAGATGAATG
GTTTAATGGCCTCTTTAATGGTTGCAGCTCGAGCTCcggtgagagaggatccccttgtctcaat
cctctctctggagtaactgcaccttgagcagagccattgaggaggaaggagtatgaaactgtgg
tgatacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTGAGAGAGGATCCCCTTGTCTCAATCCTCTCTCTGGAGTAACTGCACCTTGAGCAGAGCCA
TTGAGGAGGAAGGAGTATGAAACTGTGGTGATACATTGTAAAATCCAGCTTATCCAAGTTTGGT
GAAACCCCATCTCTTGCATAACCAGTTTGATAAAGTCCCACTCAATTCTGTCATAGGCTTTACT
CATGTTAGTTTTGACAGCCATAAAGCATCGTTTCTCTGCTCCTAAGGATTTGAGGTAATGAAGA
GCTTCATGTGTGATTAGTACATTGTCATTACTCGCTCTTTTTGGAACAAAAGCTGACTGATTTT
CAGAAATTATCTCTTGCAGGATTGGTTGCAGACGCCTAGACAGCAGCTTTGAAATGATTTTATA
GAAAACTGTGCATAAAGCTATAGGTCTGTAGTCTACCATCCTTTTCAGGCTTTGGATTTTAGGA
ATCAGTGTGATATGTGTTTTGTTGATTGTTGGCTGAAGGGTAGATGAAGAAAAGAAGGATTGGA
TCTCCAAAACAATGTTAGGACCCACAGTCATCCAATTTGATTGGAAAAAACTCGCCGAAAACCC
ATCCGGACCGGGTGCTTTGTCAGCATGGATAGAAAAACAAGCAGATTTTATTTCCTCTGCTGAA
GGCAATTAAATCAGAGAACGATTCTGTTCAGGAGAGATGAATGGTTTAATGGCCTCTTTAATGG
TTGCAGCTCGAGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.122170062
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a