Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09060_circ_g.3 |
ID in PlantcircBase | ath_circ_001550 |
Alias | At_ciR5186 |
Organism | Arabidpsis thaliana |
Position | chr1: 2921818-2922526 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G09060 |
Parent gene annotation |
JmjC domain protein JMJ24 |
Parent gene strand | - |
Alternative splicing | AT1G09060_circ_g.1 AT1G09060_circ_g.2 AT1G09060_circ_g.4 AT1G09060_circ_g.5 AT1G09060_circ_g.6 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09060.3:3 AT1G09060.1:3 AT1G09060.2:3 AT1G09060.4:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.177139551 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2922440-2921820(-) |
Potential amino acid sequence |
MSENESLLSPEQKLRDGELHDLSLGEASMEKNEPELALTVNPENLTENGDNMESSCTSSCAGGA QWDVFRRQDVPKLSGYLQRTFQKPDNIQTDFVSRPLYEGLFLNEHHKRQLRDEFGVEPWTFEQH RGEAIFIPAGCPFQITNLQVYLLVHTSEETTFERVRKTKPVPEEPDQKMSENESLLSPEQKLRD GELHDLSLGEASMEKNEPELALTVNPENLTENGDNMESSCTSSCAGGAQWDVFRRQDVPKLSGY LQRTFQKPDNIQTDFVSRPLYEGLFLNEHHKRQLRDEFGVEPWTFEQHRGEAIFIPAGCPFQIT NLQVYLLVHTSEETTFERVRKTKPVPEEPDQKMSENESLLSPEQKLRDGELHDLSLGEASMEKN EPELALTVNPENLTENGDNMESSCTSSCAGGAQWDVFRRQDVPKLSGYLQRTFQKPDNIQTDFV SRPLYEGLFLNEHHKRQLRDEFGVEPWTFEQHRGEAIFIPAGCPFQITNLQVYLLVHTSEETTF ERVRKTKPVPEEPDQKMSENESLLSPEQKLRDGELHDLSLGEASMEKNEPELALTVNPENLTEN GDNMESSCTSSCAGGAQWDVFRRQDVPKLSGYLQRTFQKPDNIQTDFVSRPLYEGLFLNEHHKR QLRDEFGVEPWTFEQHRGEAIFIPAGCPFQITNLQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |