Plant Circular RNA Database

Detail information of Os08g0421850_circ_ig.1

			
						 General Information
					
						CircRNA Name
						Os08g0421850_circ_ig.1
					
						ID in PlantcircBase
						osa_circ_037079
					
						Alias
						Os08circ09110
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 20204691-20207918  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						panicle
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os08g0421850_circ_ig.1
ID in PlantcircBase	osa_circ_037079
Alias	Os08circ09110
Organism	Oryza sativa
Position	chr8: 20204691-20207918 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ig-circRNA
Identification method	SMALT, Segemehl
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	NA
Support reads	2
Tissues	panicle
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAAACGGCTTCGGCGCAGCTCAGCCGTCGCTACGGCCACGGCTTTGCTGCGCCGGTCGTTTGGT
TAGAGGTGGGGGGAGAGAGTTGAACACCAACAACACccatctcatcgtcgtcgcctctagggtt
tctctccccacctcccccctcctccacctcccaaaacctcgccccctcgccatggccaagacca
agcagggc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCATCTCATCGTCGTCGCCTCTAGGGTTTCTCTCCCCACCTCCCCCCTCCTCCACCTCCCAAAA
CCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCT
CCGGCACCAACAAGGTCGTACGAGGTAACGTGCCTCCCCGTCCTCTGATCTCCCGGGTTCTTGA
TTTCCCTCGGGCGAGAGAGAAAGAAAAAAAATCTGAGGGGGGCAAGCAATGTGCTGTTGTTTGG
TGGGATTGGAGCAGTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTAC
GTGGCGCGGGTGGAGAAGATGGAGCTGGACGGGCGCGGGAGCGTGCGGGTGCGGGTGCGGTGGT
ACTACCGGCCCGAGGAGTCCAAGGGCGGGAGGAGGCAGTTCCATGGCGCCAAGGAGCTCTTCCT
CTCCGACCACTTCGACATGCAGAGCGCCAACACCATCGAGGGCAAGTGCGTCGTCCACTCCTTC
AAGAACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGAGTACAAGG
CCGCCACCGGCGCCTTCACCCCCGACCGCGTCGCCGTGTATGCTTGAATGCTGATTGTTCATTT
CCCGTTCCCCAGTGCAATGTTGGATTTGTTCAATTTCCATGGGATGTTAGAATGTTGATTGCTG
ATTCGTCTCTGCTTGTGTTTTCTTTTTCGTTTTTCTGAAGATACTGCAAGTGTGAGATGCCATA
CAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAGGACTGGTAATTCCATTAATAAACC
GCCTCTGTTATGATGCATTTCAGTCTATATAGTGAATGTACACTGGAAAATCATGGTAACAATA
ATGAAATTGGCACCCATTCCAGTGCATCTAAATAGCTTGTTAGCTGTTACAGGGTCTATTACTT
CTCCACCCCCCCCCCTTTTTTTTTAGTTGGGTGTGTGTGACATATTAACTTCTACATAGAGGGT
ACTCAGGTACTGAATGAGTGAACGATACGTATTAAGGAAAGGCATATTGTCCTTGGATCTGTAG
GAGATGCATATTAAGGACAATTTGTGTTTTCAGTTAATAAGGGTCTTATTATCTAAAAAGTCAA
AAAAATCTTTGAAAGGTAGTTGTGGTGCGCTAAAGGGTTCCAAGGAAAGGCTTTATTCTTGCAC
TAATAACACCAAACAAGAAAAGAGAATCTAATCCAAGGCAAGATAGACCTAGAAGGCCCTTTGA
CTCAATTAGAGCCTACATTATTCTTGGTCATTAAATCTTCGCATATGGCAAGGATTCAACAATC
TAAAAGATTCTAGAAGATTGCAAAACAACATCAAGCTCTTGTACTCTGTTGAGAACACGCTTGT
AAAATTTGCGTTTGATTTCACCCCCCTTTTTGCCTAATTAAATTGTCCTAAATGTCATATATTA
AAATATGGAGGTATTATATTTGTAGCAGTGTAAGTAACTATTATAGTTGCTAATATTTTTTTTA
TCAAGCACTCAGTTTGTCTAATGCTTTCCAAACGGTAAGCTTCATAACTAGCATGATATATAAA
TTTATTTGAGCTCTTGTGGAATCATGGGTCCTATGACCTTAGTAGTGCAAAATATGCATGCACA
CTTCTGAGACATTAGGCACTTGTTTGTCATGTCACTTGACCTCCTCAAAATAAAATTTGTAATA
TATCTGGCTTTCTTCCAAGTGTTTGTGGTATCAGGACTCAGGACTGGATTCAGATTGTTCACAT
ATACATACAAAGAGATATTGTCCTTTGCATTTTAAATTTCTTTATATGCTTCAAATGTTACTTT
TGGCTCCTGCCTTATTTAGATCTAACTGTATGCAGGTTTCATCCTTCATGCATGAGCATGACGA
TTGAGCAGGCCAAAAAACTAGATCACTTTGTGTGCTCAGATTGTGTCAAGGAAAACGGTGCAAA
GAGACCTTCACATGCATATGCAGGTTCAACAAAGTATGAGCCTAAGGTGAGCCTCTTCTTTTCT
ATATATTATATGGGTTGATTATTTATATTTTTCTGTAGAAAGATAGCTAGTTTTTCTTTTGAAA
TTAATATTATTATTGTGAATCTACCTTCCAGTACCTGGCATTGCTTACTAATTGTGTGATGCTC
ATTTTATGGGAATGAATGCGTAAATGCTCATAATATACCATATTGCTTATTTTTTCAACAAATT
TCTTTTATTTTTAGTTGATTTTCTGTATTTTTTGCAGTGGATTCAAGGTTTTAGCTTGTCAACT
GGTATCAGCCTACTATTATTTCCTTTTCTTTGAAGGCCATGATTTTGTTTTCTGGCTCACTCTC
AGATATATGTGTTACTATCTTCTGCCCATATGAGAGCTTTAAAAGTAAATTACTGAACATTCAA
GCATCTTATTTCATGGATGAGATGAGAGCTTTACGCACTTGCTAAATTTGCCAAATGATGACTG
GGCTGGAATTGTGCCTGTTCCTTGCAATATTAATACCGTTAAAATTTAACTTAGATGGATATCT
TCCCTACATTGGTTTATAATTCTTGTGCATATTTTGACATATATATGGTTGTTTTCACTTGCAT
ATATTATTTACATATCTGTTAATGGTTTTGTTCAAATGTAACTTTCATACATTAAGATAGTAAG
AGTTTATGTAAAGAAGGCAGCACATGCAATTCCACAATATCATATGCCCTTGAGCTAACAGCTA
GATTCCACATTTTAATACATAAAATTGAGGATTTTGCTGGCCATTGGATATATTATTTATAAAT
GTTAGCATTTCGAAGCAATTCAAGTGCCTGAACACTGAAACTCCTATCATTTGTTGTCTAACAT
GCATCTATTCTATTTCTTTTTTTGTTTTTTTGGTTTGTGAATGGTAGGCTGAGTCAAAAAGGCA
GAGGAGGTGAAAACTCTTGACTGGGTAACATCTGCTGCTGAGGGATACCTTGTGCTTTTCCGTG
GCGAAGGTTGAGGTGTACAGTGCAAGAGAACCAAGGCGTCTGCAGAATTCGGCCTTCGCCGCCT
CTTAGCCTGTTCAAGAAAAGAAAAAAAAAAGAACATTATGTTGTGTTGCTGTTAGGAAAACGGC
TTCGGCGCAGCTCAGCCGTCGCTACGGCCACGGCTTTGCTGCGCCGGTCGTTTGGTTAGAGGTG
GGGGGAGAGAGTTGAACACCAACAACAC
						
					

			
		

Sequences
Splice junction sequence	AAAACGGCTTCGGCGCAGCTCAGCCGTCGCTACGGCCACGGCTTTGCTGCGCCGGTCGTTTGGT TAGAGGTGGGGGGAGAGAGTTGAACACCAACAACACccatctcatcgtcgtcgcctctagggtt tctctccccacctcccccctcctccacctcccaaaacctcgccccctcgccatggccaagacca agcagggc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCATCTCATCGTCGTCGCCTCTAGGGTTTCTCTCCCCACCTCCCCCCTCCTCCACCTCCCAAAA CCTCGCCCCCTCGCCATGGCCAAGACCAAGCAGGGCAAGCGGGACGTCGACTCCTACACCATCT CCGGCACCAACAAGGTCGTACGAGGTAACGTGCCTCCCCGTCCTCTGATCTCCCGGGTTCTTGA TTTCCCTCGGGCGAGAGAGAAAGAAAAAAAATCTGAGGGGGGCAAGCAATGTGCTGTTGTTTGG TGGGATTGGAGCAGTGGGGGACTGCGTGCTGATGCGGCCGGTGGACTCGGACAACCAGCCGTAC GTGGCGCGGGTGGAGAAGATGGAGCTGGACGGGCGCGGGAGCGTGCGGGTGCGGGTGCGGTGGT ACTACCGGCCCGAGGAGTCCAAGGGCGGGAGGAGGCAGTTCCATGGCGCCAAGGAGCTCTTCCT CTCCGACCACTTCGACATGCAGAGCGCCAACACCATCGAGGGCAAGTGCGTCGTCCACTCCTTC AAGAACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGAGTACAAGG CCGCCACCGGCGCCTTCACCCCCGACCGCGTCGCCGTGTATGCTTGAATGCTGATTGTTCATTT CCCGTTCCCCAGTGCAATGTTGGATTTGTTCAATTTCCATGGGATGTTAGAATGTTGATTGCTG ATTCGTCTCTGCTTGTGTTTTCTTTTTCGTTTTTCTGAAGATACTGCAAGTGTGAGATGCCATA CAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAGGACTGGTAATTCCATTAATAAACC GCCTCTGTTATGATGCATTTCAGTCTATATAGTGAATGTACACTGGAAAATCATGGTAACAATA ATGAAATTGGCACCCATTCCAGTGCATCTAAATAGCTTGTTAGCTGTTACAGGGTCTATTACTT CTCCACCCCCCCCCCTTTTTTTTTAGTTGGGTGTGTGTGACATATTAACTTCTACATAGAGGGT ACTCAGGTACTGAATGAGTGAACGATACGTATTAAGGAAAGGCATATTGTCCTTGGATCTGTAG GAGATGCATATTAAGGACAATTTGTGTTTTCAGTTAATAAGGGTCTTATTATCTAAAAAGTCAA AAAAATCTTTGAAAGGTAGTTGTGGTGCGCTAAAGGGTTCCAAGGAAAGGCTTTATTCTTGCAC TAATAACACCAAACAAGAAAAGAGAATCTAATCCAAGGCAAGATAGACCTAGAAGGCCCTTTGA CTCAATTAGAGCCTACATTATTCTTGGTCATTAAATCTTCGCATATGGCAAGGATTCAACAATC TAAAAGATTCTAGAAGATTGCAAAACAACATCAAGCTCTTGTACTCTGTTGAGAACACGCTTGT AAAATTTGCGTTTGATTTCACCCCCCTTTTTGCCTAATTAAATTGTCCTAAATGTCATATATTA AAATATGGAGGTATTATATTTGTAGCAGTGTAAGTAACTATTATAGTTGCTAATATTTTTTTTA TCAAGCACTCAGTTTGTCTAATGCTTTCCAAACGGTAAGCTTCATAACTAGCATGATATATAAA TTTATTTGAGCTCTTGTGGAATCATGGGTCCTATGACCTTAGTAGTGCAAAATATGCATGCACA CTTCTGAGACATTAGGCACTTGTTTGTCATGTCACTTGACCTCCTCAAAATAAAATTTGTAATA TATCTGGCTTTCTTCCAAGTGTTTGTGGTATCAGGACTCAGGACTGGATTCAGATTGTTCACAT ATACATACAAAGAGATATTGTCCTTTGCATTTTAAATTTCTTTATATGCTTCAAATGTTACTTT TGGCTCCTGCCTTATTTAGATCTAACTGTATGCAGGTTTCATCCTTCATGCATGAGCATGACGA TTGAGCAGGCCAAAAAACTAGATCACTTTGTGTGCTCAGATTGTGTCAAGGAAAACGGTGCAAA GAGACCTTCACATGCATATGCAGGTTCAACAAAGTATGAGCCTAAGGTGAGCCTCTTCTTTTCT ATATATTATATGGGTTGATTATTTATATTTTTCTGTAGAAAGATAGCTAGTTTTTCTTTTGAAA TTAATATTATTATTGTGAATCTACCTTCCAGTACCTGGCATTGCTTACTAATTGTGTGATGCTC ATTTTATGGGAATGAATGCGTAAATGCTCATAATATACCATATTGCTTATTTTTTCAACAAATT TCTTTTATTTTTAGTTGATTTTCTGTATTTTTTGCAGTGGATTCAAGGTTTTAGCTTGTCAACT GGTATCAGCCTACTATTATTTCCTTTTCTTTGAAGGCCATGATTTTGTTTTCTGGCTCACTCTC AGATATATGTGTTACTATCTTCTGCCCATATGAGAGCTTTAAAAGTAAATTACTGAACATTCAA GCATCTTATTTCATGGATGAGATGAGAGCTTTACGCACTTGCTAAATTTGCCAAATGATGACTG GGCTGGAATTGTGCCTGTTCCTTGCAATATTAATACCGTTAAAATTTAACTTAGATGGATATCT TCCCTACATTGGTTTATAATTCTTGTGCATATTTTGACATATATATGGTTGTTTTCACTTGCAT ATATTATTTACATATCTGTTAATGGTTTTGTTCAAATGTAACTTTCATACATTAAGATAGTAAG AGTTTATGTAAAGAAGGCAGCACATGCAATTCCACAATATCATATGCCCTTGAGCTAACAGCTA GATTCCACATTTTAATACATAAAATTGAGGATTTTGCTGGCCATTGGATATATTATTTATAAAT GTTAGCATTTCGAAGCAATTCAAGTGCCTGAACACTGAAACTCCTATCATTTGTTGTCTAACAT GCATCTATTCTATTTCTTTTTTTGTTTTTTTGGTTTGTGAATGGTAGGCTGAGTCAAAAAGGCA GAGGAGGTGAAAACTCTTGACTGGGTAACATCTGCTGCTGAGGGATACCTTGTGCTTTTCCGTG GCGAAGGTTGAGGTGTACAGTGCAAGAGAACCAAGGCGTCTGCAGAATTCGGCCTTCGCCGCCT CTTAGCCTGTTCAAGAAAAGAAAAAAAAAAGAACATTATGTTGTGTTGCTGTTAGGAAAACGGC TTCGGCGCAGCTCAGCCGTCGCTACGGCCACGGCTTTGCTGCGCCGGTCGTTTGGTTAGAGGTG GGGGGAGAGAGTTGAACACCAACAACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.140035156

Conservation Information
Conserved circRNAs	NA
PMCS	0.140035156

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2919 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2919
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os08g0421850_circ_ig.1

Address

Any questions?

Supported by