Detail information of BGIOSGA016665_circ_g.1


General Information
CircRNA Name BGIOSGA016665_circ_g.1
ID in PlantcircBase osi_circ_014490
Alias Chr04:25120610_25121894(MH63RS2), Chr04:25142756_25144040(ZS97RS2), Chr04:25120610_25121894(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23070974-23072258  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA016665
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016665_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016665-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGGTGCACTCCGTTTGCAGCCCGGTTGCAACGCAGCCCAAACATTGGAGCAAAGTATAACT
CGTGTACTGAATGAAATCAGAGAAGAAGCTGGAAAAgcctattgagctttggactggtaaacaa
ctcttcagtgtgttagtacgtcctaacgcatgtacaaaggtgtttctgaatcttactgttaaag
agaaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTATTGAGCTTTGGACTGGTAAACAACTCTTCAGTGTGTTAGTACGTCCTAACGCATGTACA
AAGGTGTTTCTGAATCTTACTGTTAAAGAGAAAATTTATAAGACTCCTAAGGGTTCAACTCTGG
AACCTGAAGCAATGTGTCCCAATGATGGTTTTGTCTACTTCCGAAACAGTGAACTTCTATCTGG
GCAAGTTGGGAAGGCCACTTTAGGTGAGAATCCCACCCAGTACTGATTCATAGCTAAAACGACT
GCCAACCTGATAATCCTAAGTACTCACTCTGTCCCAAAAATATAGGTACCTCTCTAATCTGAGC
TAGAAAGGCAGCTATATTTTGGGATGGAGGAGTATGCTATATTCTCTTTAGGAGAACATTAGTT
TATAGGCATGGACTATAAACAATAGTCCTGGCATGGTTTACCCTCTTATGAATCACCACATACA
ATAAATGTTCCTTTAATCAGGTTTGGAAAATGTATTGTTCACTTGTGCTAGTTAGTTGTCCTTG
TTATTTTCATCCTGCTTGTTAAATTTGGAAGCAAACCAAAACAATCTTTAATCTTTTGTTTCCA
GGTAATGGGAATAAGGATGGCATGTTCTCCACTCTTGTAAGAGATTATAATTCTCATGCTGCGG
CAAGCTGTATGAACCGCTTGGCAAAATTTAGGTGAGCTACAAAATTGCGTAATGGACCCATTCT
TTCCTAAATATTAACTAACAAATGCTATGCAATTATTTTTTTGTTCTGTCTTTGTTCCATTAAA
GAATGCGAGAGGGTTAATAGAAATCACTAATAAGTCAAACACTCTGCCTTCTTTTTATTTTATT
TTACGTGAATCTGCCATCTTTTTTATTTGTACGCAAACCACTTTGCCATTTGACACTAATTAAG
TCAGGGAGCTTAGTTGGTGTACACTCGTTCAATTTTATCTCTCTATTATTACCGTTTTGCTGAG
TTTCTCATTTGTATTGTTGGTGTTAGATTGTTACATAATTTAGTGCACATTTTTTTTTCTGATT
TGAATTGCATTCATCTTTTCCTGCAGTGCAAGATTTATAGGGAACCATGGTTTCTCAATTGGTG
TGGACGATGTCCAACCGGGAGAACATTTAAACCAAGAGAAGAAAATGAAAATAGATGGAGGGTA
CAAAGATTGCCATGATCTTATTGCTTCCTATTCCAAAGGTGCACTCCGTTTGCAGCCCGGTTGC
AACGCAGCCCAAACATTGGAGCAAAGTATAACTCGTGTACTGAATGAAATCAGAGAAGAAGCTG
GAAAA
Conservation Information
Conserved circRNAs osa_circ_024358
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021