Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019075_circ_g.1 |
ID in PlantcircBase | zma_circ_009234 |
Alias | Zm07circ00019, GRMZM2G021896_C1 |
Organism | Zea mays |
Position | chr7: 15381103-15381509 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019075 |
Parent gene annotation |
RNAligase |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d019075_T001:3 Zm00001d019075_T003:3 Zm00001d019075_T002:3 Zm00001d019075_T004:3 Zm00001d019075_T005:3 Zm00001d019075_T006:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.230024447 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15381116-15381506(+) 15381135-15381115(+) 15381301-15381105(-) |
Potential amino acid sequence |
MIEMVSHGLANLEVTLKHSGSLFMYAGHHGGAYAKNSFGNVYTAVGVFVLGRLFREAWGKEAPK MQAEFNDFLETRTRMIEMVSHGLANLEVTLKHSGSLFMYAGHHGGAYAKNSFGNVYTAVGVFVL GRLFREAWGKEAPKMQAEFNDFLETRTRMIEMVSHGLANLEVTLKHSGSLFMYAGHHGGAYAKN SFGNVYTAVGVFVLGRLFREAWGKEAPKMQAEFNDFLETRTRMIEMVSHGLANLEVTLKHSGSL FMYAGHHGGAYAKNSFGNVYTAVGVFVLGRLFREAWGKEAPKMQAEFNDFLE(+) MGLQTWRLHSSILVPSSCMPVTMVVHMRRTALGMFILLWAFLFWGVCFVKLGERRLLKCKQNST IFLRQGPE*(+) MVTGIHEEGTRMLECNLQVCKPMRHHLNHSGPCLKKIVEFCLHFRSLLSPSFTKQTPQNKNAHS SINIPKAVLRICTTMVTGIHEEGTRMLECNLQVCKPMRHHLNHSGPCLKKIVEFCLHFRSLLSP SFTKQTPQNKNAHSSINIPKAVLRICTTMVTGIHEEGTRMLECNLQVCKPMRHHLNHSGPCLKK IVEFCLHFRSLLSPSFTKQTPQNKNAHSSINIPKAVLRICTTMVTGIHEEGTRMLECNLQVCKP MRHHLNHSGPC(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |