Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17940_circ_g.2 |
ID in PlantcircBase | ath_circ_003178 |
Alias | 1:6170414-6171118 |
Organism | Arabidpsis thaliana |
Position | chr1: 6170414-6171118 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G17940 |
Parent gene annotation |
At1g17940 |
Parent gene strand | - |
Alternative splicing | AT1G17940_circ_g.1 AT1G17940_circ_g.3 AT1G17940_circ_g.4 |
Support reads | 1/1 |
Tissues | root;flower |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G17940.4:4 AT1G17940.1:4 AT1G17940.5:4 AT1G17940.6:4 AT1G17940.3:4 AT1G17940.2:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.164815748 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |