Plant Circular RNA Database

Detail information of ENSRNA049493888_circ_igg.53

			
						 General Information
					
						CircRNA Name
						ENSRNA049493888_circ_igg.53
					
						ID in PlantcircBase
						osi_circ_000641
					
						Alias
						NA
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr5: 13965112-13965748  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						DCC
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							ENSRNA049493888_circ_igg.1 ENSRNA049493296_circ_ig.1 ENSRNA049493296_circ_ig.2 ENSRNA049493296_circ_ig.3 ENSRNA049493296_circ_ig.4 ENSRNA049493888_circ_igg.5 ENSRNA049493296_circ_ig.6 ENSRNA049493888_circ_igg.7 ENSRNA049493296_circ_ig.8 ENSRNA049493888_circ_igg.9 ENSRNA049493296_circ_ig.10 ENSRNA049493888_circ_igg.11 ENSRNA049493296_circ_ig.12 ENSRNA049493888_circ_igg.13 ENSRNA049493296_circ_ig.14 ENSRNA049493888_circ_igg.15 ENSRNA049493888_circ_igg.16 ENSRNA049493296_circ_ig.17 ENSRNA049493888_circ_igg.18 ENSRNA049493296_circ_ig.19 ENSRNA049493296_circ_ig.20 ENSRNA049493888_circ_igg.21 ENSRNA049493888_circ_igg.22 ENSRNA049493888_circ_igg.23 ENSRNA049493888_circ_igg.24 ENSRNA049493888_circ_igg.25 ENSRNA049493296_circ_ig.26 ENSRNA049493888_circ_igg.27 ENSRNA049493888_circ_igg.28 ENSRNA049493888_circ_igg.29 ENSRNA049493296_circ_ig.30 ENSRNA049493888_circ_igg.31 ENSRNA049493888_circ_igg.32 ENSRNA049493888_circ_igg.33 ENSRNA049493888_circ_igg.34 ENSRNA049493296_circ_ig.35 ENSRNA049493296_circ_ig.36 ENSRNA049493296_circ_ig.37 ENSRNA049493888_circ_igg.38 ENSRNA049493296_circ_ig.39 ENSRNA049493888_circ_igg.40 ENSRNA049493888_circ_igg.41 ENSRNA049493888_circ_igg.42 ENSRNA049493296_circ_ig.43 ENSRNA049493296_circ_ig.44 ENSRNA049493296_circ_ig.45 ENSRNA049493888_circ_igg.46 ENSRNA049493888_circ_igg.47 ENSRNA049493296_circ_ig.48 ENSRNA049493888_circ_igg.49 ENSRNA049493296_circ_ig.50 ENSRNA049493296_circ_ig.51 ENSRNA049493888_circ_igg.52 ENSRNA049493888_circ_igg.54 ENSRNA049493888_circ_igg.55 ENSRNA049493888_circ_igg.56 ENSRNA049493888_circ_igg.57 ENSRNA049493888_circ_igg.58 ENSRNA049493888_circ_igg.59 ENSRNA049493888_circ_igg.60 ENSRNA049493888_circ_igg.61 ENSRNA049493888_circ_ig.1 ENSRNA049493888_circ_ig.2 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CC-AA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	ENSRNA049493888_circ_igg.53
ID in PlantcircBase	osi_circ_000641
Alias	NA
Organism	Oryza sativa ssp. indica
Position	chr5: 13965112-13965748 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	igg-circRNA
Identification method	DCC
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	ENSRNA049493888_circ_igg.1 ENSRNA049493296_circ_ig.1 ENSRNA049493296_circ_ig.2 ENSRNA049493296_circ_ig.3 ENSRNA049493296_circ_ig.4 ENSRNA049493888_circ_igg.5 ENSRNA049493296_circ_ig.6 ENSRNA049493888_circ_igg.7 ENSRNA049493296_circ_ig.8 ENSRNA049493888_circ_igg.9 ENSRNA049493296_circ_ig.10 ENSRNA049493888_circ_igg.11 ENSRNA049493296_circ_ig.12 ENSRNA049493888_circ_igg.13 ENSRNA049493296_circ_ig.14 ENSRNA049493888_circ_igg.15 ENSRNA049493888_circ_igg.16 ENSRNA049493296_circ_ig.17 ENSRNA049493888_circ_igg.18 ENSRNA049493296_circ_ig.19 ENSRNA049493296_circ_ig.20 ENSRNA049493888_circ_igg.21 ENSRNA049493888_circ_igg.22 ENSRNA049493888_circ_igg.23 ENSRNA049493888_circ_igg.24 ENSRNA049493888_circ_igg.25 ENSRNA049493296_circ_ig.26 ENSRNA049493888_circ_igg.27 ENSRNA049493888_circ_igg.28 ENSRNA049493888_circ_igg.29 ENSRNA049493296_circ_ig.30 ENSRNA049493888_circ_igg.31 ENSRNA049493888_circ_igg.32 ENSRNA049493888_circ_igg.33 ENSRNA049493888_circ_igg.34 ENSRNA049493296_circ_ig.35 ENSRNA049493296_circ_ig.36 ENSRNA049493296_circ_ig.37 ENSRNA049493888_circ_igg.38 ENSRNA049493296_circ_ig.39 ENSRNA049493888_circ_igg.40 ENSRNA049493888_circ_igg.41 ENSRNA049493888_circ_igg.42 ENSRNA049493296_circ_ig.43 ENSRNA049493296_circ_ig.44 ENSRNA049493296_circ_ig.45 ENSRNA049493888_circ_igg.46 ENSRNA049493888_circ_igg.47 ENSRNA049493296_circ_ig.48 ENSRNA049493888_circ_igg.49 ENSRNA049493296_circ_ig.50 ENSRNA049493296_circ_ig.51 ENSRNA049493888_circ_igg.52 ENSRNA049493888_circ_igg.54 ENSRNA049493888_circ_igg.55 ENSRNA049493888_circ_igg.56 ENSRNA049493888_circ_igg.57 ENSRNA049493888_circ_igg.58 ENSRNA049493888_circ_igg.59 ENSRNA049493888_circ_igg.60 ENSRNA049493888_circ_igg.61 ENSRNA049493888_circ_ig.1 ENSRNA049493888_circ_ig.2
Support reads	NA
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CC-AA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACT
ATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAAtaaaatgactacaattttgggtattcac
ctaattttgttaggtataggtgcttttcttctagtactcaaagctctttattttggcggtatat
atgatacc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTA
CTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAA
AAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGG
GGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAACATATAATTGGGGGACATGTATGGTTG
GGTTTCATTTGTGTATTTGGCAGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCC
GTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGG
TTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGTGAGTTTTATGGACCT
ACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAG
CTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGG
AGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAA

Sequences
Splice junction sequence	CACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACT ATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAAtaaaatgactacaattttgggtattcac ctaattttgttaggtataggtgcttttcttctagtactcaaagctctttattttggcggtatat atgatacc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTA CTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAA AAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGG GGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAACATATAATTGGGGGACATGTATGGTTG GGTTTCATTTGTGTATTTGGCAGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCC GTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGG TTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGTGAGTTTTATGGACCT ACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAG CTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGG AGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Guria et al., 2019

circRNA

Detail information of ENSRNA049493888_circ_igg.53

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