Detail information of AT2G03010_circ_g.1


General Information
CircRNA Name AT2G03010_circ_g.1
ID in PlantcircBase ath_circ_012629
Alias NA
Organism Arabidpsis thaliana
Position chr2: 880984-881322  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI, circRNA_finder, find_circ
Parent gene AT2G03010
Parent gene annotation Family of unknown function (DUF577)
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G03010.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATGTATAGATTGGGATATGGAGTTGCTGGTAAAGGTGTGAAGCGTCCTTGAGAAACGTAACG
ATGAAAATGATAGTGTTCGAGGTGAGGGTGATGATGgtggaacgtttacaacttggacagtccg
aaaggatgaagaagctgcggctagagaagagcagatcaaacgcgaggacgctagaaaaagagat
gctgaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAACGTTTACAACTTGGACAGTCCGAAAGGATGAAGAAGCTGCGGCTAGAGAAGAGCAGAT
CAAACGCGAGGACGCTAGAAAAAGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGT
GGTTTAGCCCCTCTCACCGGAGGCAGAGAAGGGTAAGGATGAGACGGTGGTGGTGGTGGCGGCG
GCTGTTGTTAAATCCACGGATGTTGTTGTGGAGAGTGTTGAATCGGAAAATGTATAGATTGGGA
TATGGAGTTGCTGGTAAAGGTGTGAAGCGTCCTTGAGAAACGTAACGATGAAAATGATAGTGTT
CGAGGTGAGGGTGATGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.152670625
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017