Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d036971_circ_g.1 |
ID in PlantcircBase | zma_circ_008997 |
Alias | zma_circ_0002285 |
Organism | Zea mays |
Position | chr6: 107850206-107851267 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d036971 |
Parent gene annotation |
ATP/GTP-binding protein family |
Parent gene strand | - |
Alternative splicing | Zm00001d036971_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d036971_T037:2 Zm00001d036971_T001:2 Zm00001d036971_T015:2 Zm00001d036971_T042:2 Zm00001d036971_T041:2 Zm00001d036971_T044:1 Zm00001d036971_T024:2 Zm00001d036971_T029:2 Zm00001d036971_T047:2 Zm00001d036971_T031:2 Zm00001d036971_T008:3 Zm00001d036971_T040:2 Zm00001d036971_T035:2 Zm00001d036971_T003:2 Zm00001d036971_T021:2 Zm00001d036971_T025:2 Zm00001d036971_T045:2 Zm00001d036971_T022:2 Zm00001d036971_T012:1 Zm00001d036971_T023:2 Zm00001d036971_T004:2 Zm00001d036971_T027:1 Zm00001d036971_T017:2 Zm00001d036971_T010:2 Zm00001d036971_T019:1 Zm00001d036971_T034:2 Zm00001d036971_T032:2 Zm00001d036971_T011:2 Zm00001d036971_T048:1 Zm00001d036971_T033:2 Zm00001d036971_T016:2 Zm00001d036971_T005:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.111519876 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
107850492-107850495(-) |
Potential amino acid sequence |
MPNLSVEPHFLVAQNENTNDREIKPKEVATTDGGNNKSTRQPEVENVTNIHERAASMEEKQSVP EIGDLVGGGEKVVSKEIKPAKDEVIDKDLLQKLHRRYVVKRNQRKRQREEDLKKEEKSSEKRSK TTHETTKTESVDNPGGSFKMTKEGEEKMSTDQSANVHAELSKEGQIKLGTDHPIANHGEPAKGG DENMEEDPEYEEDPEEVEVYEDDEDMDDAHAEEQIAEQRYTKLAP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |