Detail information of AT1G60990_circ_g.1


General Information
CircRNA Name AT1G60990_circ_g.1
ID in PlantcircBase ath_circ_008243
Alias NA
Organism Arabidpsis thaliana
Position chr1: 22463669-22464519  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G60990
Parent gene annotation Putative transferase At1g60990, chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G60990.1:5
AT1G60990.3:5
AT1G60990.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTATCTTACTCCCATAAGAAGAAGTATTATTACCATGATCCAGGCATGTGCAATATCTATCGT
CCTTGCTGTTGGGGTAACAAATACAGTGTCACATCCcttgagtgattctaagtttctcccaggc
tacagaacccatcggaatagcaccttcagctaaaagggtcttccagactgaaacggcaccccct
ggcgacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAGTGATTCTAAGTTTCTCCCAGGCTACAGAACCCATCGGAATAGCACCTTCAGCTAAAAG
GGTCTTCCAGACTGAAACGGCACCCCCTGGCGACATTAACATGGTAAAGCCTTCATCTGAAATA
AGACTTCCGACCCCAACTGTTATTGGCATTCCATCAAACTGACAAAGAAAAGGGCTTGTTACTT
ACATGTTGCTTCACAAGATCTGTTTCGATATTACAAAAAAAGACTTACACTATAATGCTGATGC
CTGCCATATGGCTGCCCAATAAGATCTCCCAGATTCAGTTTAGACATGATCTGTTTCATGTTTT
TTACAGTAGCATAAGAATAATGTAACTGAACTAGCATAAAGACTAAAACAGAGAAAATTTTACA
AGGATTAGTCAGTCTGCTTAAAGAATAATCTTACTTGGTTGCTTTTGGGTCCAGCTAAAGCAAA
TAAGCAAGTTTGCTTGGTGATGTCCTTGATCTCTACCTTGTCAGCAAAGAAAATGTACCTGAGA
AGACGAAGATGAGAAATAAGTGATGTCATGGTTATCCAACGAAAGCAGATTTTCAAAGAAACCA
GCAAAAATGTTATATGTTAACAAGATGAAACGTTTTAACATACTTGTTGAGCATCTCAATTATG
CTTTGGCATGTCGTTGGAGAAACAGTCAGCAATATTGCATTTTTCTGGAAACAAAAAAAGGTAT
GTTAAACATAGATTATCAATATATGAGCCACTAAATGTGAACCCAAACTTATCTTACTCCCATA
AGAAGAAGTATTATTACCATGATCCAGGCATGTGCAATATCTATCGTCCTTGCTGTTGGGGTAA
CAAATACAGTGTCACATCC
Conservation Information
Conserved circRNAs NA
PMCS 0.173737485
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017