Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01010_circ_g.9 |
ID in PlantcircBase | ath_circ_035815 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 4335-4679 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT5G01010 |
Parent gene annotation |
GOLD (InterPro:IPR009038) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 4/4 |
Tissues | whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G01010.3:2 AT5G01010.5:2 AT5G01010.4:2 AT5G01010.2:2 AT5G01010.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.302795015 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4621-4337(-) |
Potential amino acid sequence |
MWKNREQMEEILFLLSPSRWPVQLREPSTSEDAEFASILRTLKDSFDNAFTAMISFQTKNSERI FSTGETSLIDEANRQPPHKIDENMWKNREQMEEILFLLSPSRWPVQLREPSTSEDAEFASILRT LKDSFDNAFTAMISFQTKNSERIFSTGETSLIDEANRQPPHKIDENMWKNREQMEEILFLLSPS RWPVQLREPSTSEDAEFASILRTLKDSFDNAFTAMISFQTKNSERIFSTGETSLIDEANRQPPH KIDENMWKNREQMEEILFLLSPSRWPVQLREPSTSEDAEFASILRTLKDSFDNAFTAMISFQTK NSERIFST(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Pan et al., 2017 |