Detail information of BGIOSGA034051_circ_igg.1


General Information
CircRNA Name BGIOSGA034051_circ_igg.1
ID in PlantcircBase osi_circ_008988
Alias Chr11:17140876_17147308(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 11642589-11646513  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTTAAAAACGAAAAATGCCTCATTTAATTTGGATTTATTTTTGTTAAGCCTATTTACAAGAG
AAAACATTCAGTTAAAAACGAAAAATGCCTCATTTAccgagctggagcttgagctgccggagcg
gtggaggatgccgccggtcttgcggtcctccctcgccggctggaactggccgccggcgccggcg
ccggcatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGAGCTGGAGCTTGAGCTGCCGGAGCGGTGGAGGATGCCGCCGGTCTTGCGGTCCTCCCTCGC
CGGCTGGAACTGGCCGCCGGCGCCGGCGCCGGCATGACCTCCCATCCCCATCGCTCCGTGGCCT
CCGCCGGGCGCGGTGGCGCCGCCGCCGTACTGGCCGGCGCCGACCGGGTTGCCGTACACGTCGA
CGCGGTCGGCGCCGTAGCCGTGCTGCCCCTGGTAGTTCTCCATCCTCTCAAGCAAATTAAAAGC
TAATAACTCTCCGCTTAATTAGCTCTGGCTAGATCCCTGAACTCGTGTACCCAAGTGTTCCAGC
TAGTGTTGTTGCTATCAGTAAGATGACTTGTGTCAAAGCCGTCGATCGATGCAGCAAAGCAGCT
GGCCGGGGTGCCCTGCCATTTATACCGCGGCGAGACTGTGGGTTGTGTACGTGTGATCTCTCTA
CTGGAGTTAAAAAAAAAATGGAAGCTTAATTTGGTCATCAGGAAGATGGGGGTACGTGTGACGC
ATGGGTGAGCCGGGAGGCGGAGCTGGCAATATCGAGGGAATAAAGGCGGAGGAGGGACGTGTAC
GTAGCGCGCCGTGTCGGTGGTGCCACGCGGCAACCTGCTGCCACGTACTGTGTTTCCGTTGGGT
TCTTCTGGACACTTTGTTATCTGTGTGGGGGAGATGACTGCGCGTGCTGCATGCATACCATCAT
ATCCATGCAGATGGATAAGAAGACATGCACGTGTTCGATATCTGTTGTGGCCGGTGGGGGAACG
AGCGATCGTGATGATACGGAGTTCACGGATGCCCGGTGGACTATCGCCGCATCGGGGAAGGACG
ACTACTCGTCGACAAGGATGTGTTTTGAGGTATGACTGAGGCCAGGTTTAAAGTTCCCAAAATT
TTTTTCTCAAAACCATTGCACAAATCTTTAATACATAGAACATTAAATACATACTTAAATTAAA
AAAACTAATTGCACAGTTAGGAGAGAAATCGCGAGAGGAATCTTTTGAGCCTAATTCGTTCATG
ATTAGCCATAAGTGCTACAGTAACCCACATGTACTAATGATGAATTAATTAGGCTAAAAAGATT
CGTCTCGCGGTTTTCAGGCGATTTTTTATTCGTGTCCGAAAATCTCTTCCGACATCCGATCAAA
CATCCGATGTGATAGCTAAAAAATTTTCATTTTGCAAACTAAACAAACCATAAGTTAGAAATGT
ATATCTTCTTGCACATGGCACGTAAATCGATGAGATAGATTAGCATATAATTAATTATGTATTA
GTTAACATATAAAAATAGATCAGTATGAATTTTTTAAATAATTTTCTATAGAAAAAATATTAGA
AAAAACAAAACGTTAAGTCTATTAACAATCATATATTATATTTATTATACAAAGTTTATTAAAC
TTTATTTAAATGCTCTTAAGCCGTCATTTGGCACACTAATAAATTAGAGGAAGTCCTATAAGTT
ACAAGAAGCAAAAAGGTAATTGATATAATCATTGATTTTCAGTTAAATAAATGGTCCTATAATT
TTATATTATTAGATTAAATCTATTTAAATAGAAACTCAAAGTAACCCAAAGTAACCCATCCTAT
CAGCCACATCAATCCCCATGCGATGAAGAATTGAACGCACATACGTACCGGCCTCTACCTCTCT
TTTCCTTCTAATTTTCTAGGATCAACTCAAACAAAGAAACAATCAAAATTTAAATTCGATAATC
CTTTGCGTCGGTCGCTCGGGGGAGGGAGAAAAATTGGGCGCTCCCTCCCCCCGCGACGGGCTCT
GCCTCCTGGGCCCCACCAGTGCCCCTACCCCCTGCCACGTGTCTCCACCACATACTCCATTGCA
ACAAATCACCCATATATTTTGGGAACACTCTATTAAGAGGATTCGTTTTATTTTTTGTTTCACC
AAAAATTTCACCTAGTGCACTCATAATGTTTCACTATGTATGAATCAAATGTTGCAGTGAATTG
AAACTTTTTTTTTACAACAAATCACACACATATTATGGAAACCCTCTATTAAGAAAATCTGTTT
CATCCTAGTGTACTCGTGATGTTTAACTATATATAGATTAAATGTTGCAGTGAATTCAAGTATT
TTTTCGCTATTTGCTAAAACATTGTTTTTATATAAGGTGAAACAACGGTCGATTTAAACGATTG
AAACATTTTCGATCTACTTAGTGAACAAATTCTGATATACTTGGTGAAACAACGTGAAACATTT
AAAAATAATTCAATAATAAGCTAAAAAAATTTTCATCGGAATATATCCATGTACGGTCTTGTTT
TAAAGATTTAATTGCAACGAATTTAATGGTGCAATCAGATCATAATTTGGATAAAATAATTTAA
AAGAAAAAATAGTTAAAATAGTTTTGCATGCATGTATGCATGCGTGCTGGCGTCAGCTGACGTG
AGCGCCCGATTTTTCCCACCCAAGATCGGGCGCCCGACGCGTAGTGCCCTCCATTTAAATTAAG
TCCCATATGTTTTAAGTTGTATATTCAATTATGAATATGCATGTCTGGACCATTATTTTATTTA
TAATTAGCTCAACAATTTAAGACACAAAATCCTGCAAACGCTCCTAAGCTACACGTGACGCTCT
AATAAATTTGAGAACAAAATTTGTATTTTAAAAGCAATAGCCGAATTTAAATATTTGAGTCCAT
AGTCCAGGTTCTACCACCAGCAAAGACCTCGAAATCATGTTAGGTACTCTAGGATAGAACCCGA
CGGAGGCAGATCTGGACATGATTAGCAAAGTGGAAGCGGATGCCGGCAACATCGGCTTCTAGGA
GAGTTCCTGAGCCTAATAGCATGCAAGATGATTAGATGGCCAAGGACTCCGAGGAAGAGCTGCA
GGAATGGTTCCATGTCTTCAACAAAAACCAGAAGCCGGCTTCATCTCCATTGTCGAACGCTCTG
CCACGGCCAGAATCCGGCAGAGGCGAGGCTGCAGGACATGATCAACAAGGTGGACACCGACGAC
AGTGGCAACATCGATTTCCATCAGAGTTTGTGGCCCTAATGGCGCATTCGATGATTAGATAAAA
GGACAAGGACTCCTCGATGGAGGCGTTCAGCGTGTTCGACAAAGACCAGAAGACGACTTTATCT
CCGTGCTAGGCTTCATCACATCATAGCCAATGCATTGAAAGAGGCTCAGCGATGAGGATGTCAG
CGAGATTATCTGCGAGATGAATACCGTAATTTTGACAAATTGACCCTTTGAAAAAATTTATTTC
AAGAATAGACCATGCCAAAAACTTATTATAAAAATAGGCCGTCGACTCAGAGGTGTAACGCTTT
AGCGCCATACATATTAACGCTGATATTTCATCCGAGCTGGCAAAAATTGGCCAGGTCAGAAGGA
GTCAACGCCATTCAGTTCAGAGGTGAACAACGATGGTAGATCTACTACGAGGAATTTGTAATTA
ATTTCAGAAAAAAATTAAAAGAAGCATTAAAAGATAAAATAAAATCTTCACTAAAATTGTAAAT
AAAAATATAATAAGAGTCCATGTAGAATATATATAAATATTTGAAATTCGAAATAATAAAATAA
GTTTTAAAAGAAGAACAAAAATACAACACAATACAATTTTGAAATCCCACAAAATAAATTTATA
AAAAAATAAAAAAAATGAAATTAAAATCACTCACTCACTAAATTCAAAATAAAAAAAATATAAT
TTTAAAGAACTTTGCTATTTTTATTAATTCACATCCATGCATTAATCAATTAAAGAGAGGAATA
GCAATAAAAGTTTCTCGAAGAGATTTAAAAAAGAGTGACGATGAACATTCAGTTAAAAACGAAA
AATGCCTCATTTAATTTGGATTTATTTTTGTTAAGCCTATTTACAAGAGAAAACATTCAGTTAA
AAACGAAAAATGCCTCATTTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021