Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0469300_circ_g.3 |
ID in PlantcircBase | osa_circ_014633 |
Alias | Os02circ12500 |
Organism | Oryza sativa |
Position | chr2: 15870475-15872292 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | Os02g0469300 |
Parent gene annotation |
Similar to OSIGBa0148D14.7 protein. (Os02t0469300-01);ATP-bindin g region, ATPase-like domain containing protein. (Os02t0469300-0 2) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | panicle |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0469300-02:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011687 |
PMCS | 0.11139527 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15870521-15870542(+) 15872249-15870542(+) 15870510-15872248(-) |
Potential amino acid sequence |
MILRGKEIEHHNIIGDMMMKNHVIYKPVMTDGFPRDIDMMTDVTIGFVKDAKHHIPIQGFNVYH KNRLIKPFWRVWALPGIQGRGVIGVLEVNFVEPAHDKQDFERTNSLARLEARLNLMQKKYWSDN CHRIGYGGNSANRKSGREYKELCIDFVSSSSICIPNDFTRQRD*(+) MVAILLTENLGENIKSYASILYLRVPSVFQMILRGKEIEHHNIIGDMMMKNHVIYKPVMTDGFP RDIDMMTDVTIGFVKDAKHHIPIQGFNVYHKNRLIKPFWRVWALPGIQGRGVIGVLEVNFVEPA HDKQDFERTNSLARLEARLNLMQKKYWSDNCHRIGYGGNSANRKSGREYKELCIDFVSSSSICI PNDFTRQRD*(+) MELEDTKSMHSSLYSLPDFLLAELPP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |