Plant Circular RNA Database

Detail information of AT5G64220_circ_g.5

			
						 General Information
					
						CircRNA Name
						AT5G64220_circ_g.5
					
						ID in PlantcircBase
						ath_circ_045712
					
						Alias
						5:25686782-25689545
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 25686782-25689545  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G64220						
					
						Parent gene annotation
						
							Calmodulin-binding transcription activator 2
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G64220_circ_g.1 AT5G64220_circ_g.2 AT5G64220_circ_g.3 AT5G64220_circ_g.4 AT5G64220_circ_g.6 AT5G64220_circ_g.7 AT5G64220_circ_g.8 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G64220.2:8
AT5G64220.1:8

General Information
CircRNA Name	AT5G64220_circ_g.5
ID in PlantcircBase	ath_circ_045712
Alias	5:25686782-25689545
Organism	Arabidpsis thaliana
Position	chr5: 25686782-25689545 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G64220
Parent gene annotation	Calmodulin-binding transcription activator 2
Parent gene strand	+
Alternative splicing	AT5G64220_circ_g.1 AT5G64220_circ_g.2 AT5G64220_circ_g.3 AT5G64220_circ_g.4 AT5G64220_circ_g.6 AT5G64220_circ_g.7 AT5G64220_circ_g.8
Support reads	2
Tissues	seedling
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G64220.2:8 AT5G64220.1:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTATGATCGACTTT
TGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAGatatcaagcaattgctgtcagaagcaca
acacaggtggctgagacctgctgagatttgtgaaattcttcggaatcatcagaagtttcatatt
gcgtcaga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1391
Transcript exons: 25686782-25686901,25687164-25687279,25687433-25687521,25
687927-25687969,25688121-25688253,25688395-25688517,2568
8601-25688860,25689039-25689545
ATATCAAGCAATTGCTGTCAGAAGCACAACACAGGTGGCTGAGACCTGCTGAGATTTGTGAAAT
TCTTCGGAATCATCAGAAGTTTCATATTGCGTCAGAGCCTCCCAACCGACCACCCAGTGGTTCA
CTCTTTCTCTTCGATAGGAAGGTGCTCAGATATTTCCGAAAAGACGGGCACAATTGGAGGAAGA
AGAAAGATGGGAAAACAGTGAAAGAGGCTCACGAAAAGCTGAAGGTAGGAAGCATTGATGTGTT
ACATTGTTACTATGCACATGGAGAAGATAATGAGAACTTCCAGAGGCGGTGCTACTGGATGCTT
GAACAGGATCTGATGCACATTGTTTTCGTTCACTACTTGGAGGTTAAGGGTAACCGAATGAGTA
CCAGTGGAACTAAAGAAAACCATTCAAATTCTCTGAGTGGCACGGGTTCTGTAAATGTTGATTC
CACAGCAACCCGATCCAGCATATTGTCACCATTATGTGAAGATGCTGATTCTGGGGATAGTCGT
CAAGCAAGTTCCAGTTTGCAACAAAATCCTGAACCTCAAACTGTTGTTCCTCAGATTATGCATC
ATCAGAATGCTAGCACAATCAATTCTTACAATACAACCTCTGTTTTGGGAAATCGAGATGGTTG
GACGTCAGCTCATGGGAACAGGGTCAAAGGAAGTAACTCCCAAAGATCAGGTGATGTCCCAGCA
TGGGATGCTTCCTTTGAGAATTCATTGGCAAGATACCAGAATCTACCTTATAATGCTCCGTTGA
CTCAGACACAGCCTTCTACTTTTGGTTTGATCCCCATGGAAGGGAAAACAGAGAAAGGTTCCCT
GTTAACGTCAGAGCATCTTAGAAATCCTCTTCAAAGTCAAGTAAATTGGCAGACTCCTGTTCAG
GAAAGCGTGCCATTGCAAAAATGGCCCATGGATTCGCATTCTGGAATGACTGATGCTACTGATC
TTGCCTTATTTGGGCAAGGAGCACATGAAAATTTTGGGACATTTTCCAGTCTTCTTGGTAGTCA
AGATCAACAGTCTAGTAGTTTCCAAGCTCCTTTCACAAATAATGAAGCAGCATATATACCTAAA
TTAGGCCCCGAGGATCTTATATATGAAGCAAGTGCAAATCAAACACTACCTCTTAGAAAAGCAT
TGTTAAAAAAAGAGGATAGTTTGAAAAAGGTTGACAGTTTCTCTCGGTGGGTTAGTAAAGAACT
TGGGGAGATGGAAGACTTGCAGATGCAATCTTCATCTGGAGGTATTGCATGGACTTCTGTTGAA
TGTGAAAACGCAGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTA
TGATCGACTTTTGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAG
						
					

						Genomic sequence
						
							ATATCAAGCAATTGCTGTCAGAAGCACAACACAGGTGGCTGAGACCTGCTGAGATTTGTGAAAT
TCTTCGGAATCATCAGAAGTTTCATATTGCGTCAGAGCCTCCCAACCGACCACCCAGTATGTTT
CTTGCTGATTTTCTTCATTTTTGTTTGCAATATATTCTTATTTTTTGAGCTGTACAATCAATAG
ATGCTGAATAAGTTACATTAGCTTGGGTTTTATTTCTGTCTTGCTTTAACGAACTTTATGCTTG
ACGTGTTCACTCCCCCGTTTATCCTGTTAGTCCTGAATAGTTCAGAAGTTTTGCGTGTTGTGTG
CCTTGACAATAATTTATTGCGGTTTGTCTTCTCTAATTAACAGAAATTCCCTGCTCTTCTAGGT
GGTTCACTCTTTCTCTTCGATAGGAAGGTGCTCAGATATTTCCGAAAAGACGGGCACAATTGGA
GGAAGAAGAAAGATGGGAAAACAGTGAAAGAGGCTCACGAAAAGCTGAAGGTTAATATTTCTAT
TTATGTGTCCTCGTTAAATATTAGTGCAGATTAATGCAATGACCTTGAAACCAATTCCTTGGTT
TTACTACTGATTTTTCTAGCTGATAATGCAACATCTCAATGTTAGAGAGTAATAAGATTGTGTA
AGTATACACAGGTAGGAAGCATTGATGTGTTACATTGTTACTATGCACATGGAGAAGATAATGA
GAACTTCCAGAGGCGGTGCTACTGGATGCTTGAACAGTGAGTCTATCTATGTTTGTCCACATTT
CATATGTTTTGCTCTGTTTAGTATCATAAGCGTTAGTTTTTCAGCATTTATGTGCTTTGTATAA
AGTGTGCATGGTAGTCTGCTAGTGTCCTGGGAATGGCCTTTTTATTGTATTAGCAGAAAATGAG
CTAGAAGGGCTATAGAAAGGAATATTATTATAATTTCCGAGATTCTGCTATAAAACATCAATTT
CTAAGTTGTGAGATGAAATCGAGGATAATGTTTATACAAGACAAGACTGAACCAAAGGCATTTC
ACGTGATCTCTAAAATCCCTATCTTCTGGAATGAAATGTGCTTGTTGGTACTTTTCTTCATTTA
TTGTCACTTTTCAGTGTTAGTGCTCATGTCCACTGTTTGTGTGTTACATGGATACAGGGATCTG
ATGCACATTGTTTTCGTTCACTACTTGGAGGTTAAGGTATAGCTTTTGTTTTGTACTGTACTAA
TATATTCTTAAAATATGAACTTCCATCGCTCAACACTATATCTTCCTTTTTAAGTGGATGCTGT
CTTTCCTATGTGTGGTTTTGTTATAGTCATCTTATATTGTACGTCATGCTATTATACAGGGTAA
CCGAATGAGTACCAGTGGAACTAAAGAAAACCATTCAAATTCTCTGAGTGGCACGGGTTCTGTA
AATGTTGATTCCACAGCAACCCGATCCAGCATATTGTCACCATTATGTGAAGATGCTGATTCTG
GTATATAATTTCTCTCTTATATAATCTGCTTTAGTATCTTTTTGTTTAAGAGTGTAGATCTTTC
AGTGATGAGACTTTGTGGTTGATTGTATTGCTGCTCGTGGTTCTGCTTCAACACAAACTAATAT
CATTTTGACGCAGGGGATAGTCGTCAAGCAAGTTCCAGTTTGCAACAAAATCCTGAACCTCAAA
CTGTTGTTCCTCAGATTATGCATCATCAGAATGCTAGCACAATCAATTCTTACAATACAACCTC
TGTTTTGGGTACTTCATTTGCTTTCTGTTTTACAAGCTTCCTTGCCTTACCAAATTCCTGCATG
TTTGCTGAGATTGTCTTCTCTTCCTAGGAAATCGAGATGGTTGGACGTCAGCTCATGGGAACAG
GGTCAAAGGAAGTAACTCCCAAAGATCAGGTGATGTCCCAGCATGGGATGCTTCCTTTGAGAAT
TCATTGGCAAGATACCAGAATCTACCTTATAATGCTCCGTTGACTCAGACACAGCCTTCTACTT
TTGGTTTGATCCCCATGGAAGGGAAAACAGAGAAAGGTTCCCTGTTAACGTCAGAGCATCTTAG
AAATCCTCTTCAAAGTCAAGTAAATTGGCAGGTGATATATGCTTGCTTATAGCTAAGCTATTCA
TTTTAAATCTAAGTAGGATTTGTGCCTATGTTTGTATTATGGTGCCACTGTTTAATTTGTTTAC
TTAATCATTCAAGCATGAATTTTCTCATCATGAATGTTGGTTCTTTGAAAATATCTGATTTTGA
GTTTCTCTTCTCTATAGACTCCTGTTCAGGAAAGCGTGCCATTGCAAAAATGGCCCATGGATTC
GCATTCTGGAATGACTGATGCTACTGATCTTGCCTTATTTGGGCAAGGAGCACATGAAAATTTT
GGGACATTTTCCAGTCTTCTTGGTAGTCAAGATCAACAGTCTAGTAGTTTCCAAGCTCCTTTCA
CAAATAATGAAGCAGCATATATACCTAAATTAGGCCCCGAGGATCTTATATATGAAGCAAGTGC
AAATCAAACACTACCTCTTAGAAAAGCATTGTTAAAAAAAGAGGATAGTTTGAAAAAGGTTGAC
AGTTTCTCTCGGTGGGTTAGTAAAGAACTTGGGGAGATGGAAGACTTGCAGATGCAATCTTCAT
CTGGAGGTATTGCATGGACTTCTGTTGAATGTGAAAACGCAGCAGCTGGGTCTTCCTTAAGTCC
TTCTCTGTCCGAGGATCAGCGCTTCACTATGATCGACTTTTGGCCCAAATGGACTCAGACAGAC
TCAGAAGTTGAG
						
					

			
		

Sequences
Splice junction sequence	AGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTATGATCGACTTT TGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAGatatcaagcaattgctgtcagaagcaca acacaggtggctgagacctgctgagatttgtgaaattcttcggaatcatcagaagtttcatatt gcgtcaga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1391 Transcript exons: 25686782-25686901,25687164-25687279,25687433-25687521,25 687927-25687969,25688121-25688253,25688395-25688517,2568 8601-25688860,25689039-25689545 ATATCAAGCAATTGCTGTCAGAAGCACAACACAGGTGGCTGAGACCTGCTGAGATTTGTGAAAT TCTTCGGAATCATCAGAAGTTTCATATTGCGTCAGAGCCTCCCAACCGACCACCCAGTGGTTCA CTCTTTCTCTTCGATAGGAAGGTGCTCAGATATTTCCGAAAAGACGGGCACAATTGGAGGAAGA AGAAAGATGGGAAAACAGTGAAAGAGGCTCACGAAAAGCTGAAGGTAGGAAGCATTGATGTGTT ACATTGTTACTATGCACATGGAGAAGATAATGAGAACTTCCAGAGGCGGTGCTACTGGATGCTT GAACAGGATCTGATGCACATTGTTTTCGTTCACTACTTGGAGGTTAAGGGTAACCGAATGAGTA CCAGTGGAACTAAAGAAAACCATTCAAATTCTCTGAGTGGCACGGGTTCTGTAAATGTTGATTC CACAGCAACCCGATCCAGCATATTGTCACCATTATGTGAAGATGCTGATTCTGGGGATAGTCGT CAAGCAAGTTCCAGTTTGCAACAAAATCCTGAACCTCAAACTGTTGTTCCTCAGATTATGCATC ATCAGAATGCTAGCACAATCAATTCTTACAATACAACCTCTGTTTTGGGAAATCGAGATGGTTG GACGTCAGCTCATGGGAACAGGGTCAAAGGAAGTAACTCCCAAAGATCAGGTGATGTCCCAGCA TGGGATGCTTCCTTTGAGAATTCATTGGCAAGATACCAGAATCTACCTTATAATGCTCCGTTGA CTCAGACACAGCCTTCTACTTTTGGTTTGATCCCCATGGAAGGGAAAACAGAGAAAGGTTCCCT GTTAACGTCAGAGCATCTTAGAAATCCTCTTCAAAGTCAAGTAAATTGGCAGACTCCTGTTCAG GAAAGCGTGCCATTGCAAAAATGGCCCATGGATTCGCATTCTGGAATGACTGATGCTACTGATC TTGCCTTATTTGGGCAAGGAGCACATGAAAATTTTGGGACATTTTCCAGTCTTCTTGGTAGTCA AGATCAACAGTCTAGTAGTTTCCAAGCTCCTTTCACAAATAATGAAGCAGCATATATACCTAAA TTAGGCCCCGAGGATCTTATATATGAAGCAAGTGCAAATCAAACACTACCTCTTAGAAAAGCAT TGTTAAAAAAAGAGGATAGTTTGAAAAAGGTTGACAGTTTCTCTCGGTGGGTTAGTAAAGAACT TGGGGAGATGGAAGACTTGCAGATGCAATCTTCATCTGGAGGTATTGCATGGACTTCTGTTGAA TGTGAAAACGCAGCAGCTGGGTCTTCCTTAAGTCCTTCTCTGTCCGAGGATCAGCGCTTCACTA TGATCGACTTTTGGCCCAAATGGACTCAGACAGACTCAGAAGTTGAG
Genomic sequence	ATATCAAGCAATTGCTGTCAGAAGCACAACACAGGTGGCTGAGACCTGCTGAGATTTGTGAAAT TCTTCGGAATCATCAGAAGTTTCATATTGCGTCAGAGCCTCCCAACCGACCACCCAGTATGTTT CTTGCTGATTTTCTTCATTTTTGTTTGCAATATATTCTTATTTTTTGAGCTGTACAATCAATAG ATGCTGAATAAGTTACATTAGCTTGGGTTTTATTTCTGTCTTGCTTTAACGAACTTTATGCTTG ACGTGTTCACTCCCCCGTTTATCCTGTTAGTCCTGAATAGTTCAGAAGTTTTGCGTGTTGTGTG CCTTGACAATAATTTATTGCGGTTTGTCTTCTCTAATTAACAGAAATTCCCTGCTCTTCTAGGT GGTTCACTCTTTCTCTTCGATAGGAAGGTGCTCAGATATTTCCGAAAAGACGGGCACAATTGGA GGAAGAAGAAAGATGGGAAAACAGTGAAAGAGGCTCACGAAAAGCTGAAGGTTAATATTTCTAT TTATGTGTCCTCGTTAAATATTAGTGCAGATTAATGCAATGACCTTGAAACCAATTCCTTGGTT TTACTACTGATTTTTCTAGCTGATAATGCAACATCTCAATGTTAGAGAGTAATAAGATTGTGTA AGTATACACAGGTAGGAAGCATTGATGTGTTACATTGTTACTATGCACATGGAGAAGATAATGA GAACTTCCAGAGGCGGTGCTACTGGATGCTTGAACAGTGAGTCTATCTATGTTTGTCCACATTT CATATGTTTTGCTCTGTTTAGTATCATAAGCGTTAGTTTTTCAGCATTTATGTGCTTTGTATAA AGTGTGCATGGTAGTCTGCTAGTGTCCTGGGAATGGCCTTTTTATTGTATTAGCAGAAAATGAG CTAGAAGGGCTATAGAAAGGAATATTATTATAATTTCCGAGATTCTGCTATAAAACATCAATTT CTAAGTTGTGAGATGAAATCGAGGATAATGTTTATACAAGACAAGACTGAACCAAAGGCATTTC ACGTGATCTCTAAAATCCCTATCTTCTGGAATGAAATGTGCTTGTTGGTACTTTTCTTCATTTA TTGTCACTTTTCAGTGTTAGTGCTCATGTCCACTGTTTGTGTGTTACATGGATACAGGGATCTG ATGCACATTGTTTTCGTTCACTACTTGGAGGTTAAGGTATAGCTTTTGTTTTGTACTGTACTAA TATATTCTTAAAATATGAACTTCCATCGCTCAACACTATATCTTCCTTTTTAAGTGGATGCTGT CTTTCCTATGTGTGGTTTTGTTATAGTCATCTTATATTGTACGTCATGCTATTATACAGGGTAA CCGAATGAGTACCAGTGGAACTAAAGAAAACCATTCAAATTCTCTGAGTGGCACGGGTTCTGTA AATGTTGATTCCACAGCAACCCGATCCAGCATATTGTCACCATTATGTGAAGATGCTGATTCTG GTATATAATTTCTCTCTTATATAATCTGCTTTAGTATCTTTTTGTTTAAGAGTGTAGATCTTTC AGTGATGAGACTTTGTGGTTGATTGTATTGCTGCTCGTGGTTCTGCTTCAACACAAACTAATAT CATTTTGACGCAGGGGATAGTCGTCAAGCAAGTTCCAGTTTGCAACAAAATCCTGAACCTCAAA CTGTTGTTCCTCAGATTATGCATCATCAGAATGCTAGCACAATCAATTCTTACAATACAACCTC TGTTTTGGGTACTTCATTTGCTTTCTGTTTTACAAGCTTCCTTGCCTTACCAAATTCCTGCATG TTTGCTGAGATTGTCTTCTCTTCCTAGGAAATCGAGATGGTTGGACGTCAGCTCATGGGAACAG GGTCAAAGGAAGTAACTCCCAAAGATCAGGTGATGTCCCAGCATGGGATGCTTCCTTTGAGAAT TCATTGGCAAGATACCAGAATCTACCTTATAATGCTCCGTTGACTCAGACACAGCCTTCTACTT TTGGTTTGATCCCCATGGAAGGGAAAACAGAGAAAGGTTCCCTGTTAACGTCAGAGCATCTTAG AAATCCTCTTCAAAGTCAAGTAAATTGGCAGGTGATATATGCTTGCTTATAGCTAAGCTATTCA TTTTAAATCTAAGTAGGATTTGTGCCTATGTTTGTATTATGGTGCCACTGTTTAATTTGTTTAC TTAATCATTCAAGCATGAATTTTCTCATCATGAATGTTGGTTCTTTGAAAATATCTGATTTTGA GTTTCTCTTCTCTATAGACTCCTGTTCAGGAAAGCGTGCCATTGCAAAAATGGCCCATGGATTC GCATTCTGGAATGACTGATGCTACTGATCTTGCCTTATTTGGGCAAGGAGCACATGAAAATTTT GGGACATTTTCCAGTCTTCTTGGTAGTCAAGATCAACAGTCTAGTAGTTTCCAAGCTCCTTTCA CAAATAATGAAGCAGCATATATACCTAAATTAGGCCCCGAGGATCTTATATATGAAGCAAGTGC AAATCAAACACTACCTCTTAGAAAAGCATTGTTAAAAAAAGAGGATAGTTTGAAAAAGGTTGAC AGTTTCTCTCGGTGGGTTAGTAAAGAACTTGGGGAGATGGAAGACTTGCAGATGCAATCTTCAT CTGGAGGTATTGCATGGACTTCTGTTGAATGTGAAAACGCAGCAGCTGGGTCTTCCTTAAGTCC TTCTCTGTCCGAGGATCAGCGCTTCACTATGATCGACTTTTGGCCCAAATGGACTCAGACAGAC TCAGAAGTTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.295366713

Conservation Information
Conserved circRNAs	NA
PMCS	0.295366713

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G64220_circ_g.5

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