Detail information of Os06g0594100_circ_g.5


General Information
CircRNA Name Os06g0594100_circ_g.5
ID in PlantcircBase osa_circ_031286
Alias NA
Organism Oryza sativa
Position chr6: 23348197-23349392  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os06g0594100
Parent gene annotation Crotonase, core domain containing protein. (Os06t0594100-01);Sim
ilar to predicted protein. (Os06t0594100-02)
Parent gene strand +
Alternative splicing Os06g0594100_circ_g.2 Os06g0594100_circ_g.3 Os06g0594100_circ_g.4 Os06g0594100_circ_g.6
Support reads 1
Tissues shoot, root
Exon boundary   Yes-No
Splicing signals   GC-AG
Number of exons covered Os06t0594100-01:4
Os06t0594100-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATGATTTTGTT
GAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAGgatcttaccttgggatgacagggaaaag
gatatcatcacctgctgatgcccttttctttggtcttggaactcattatgtaccttcagcgaac
ctgggacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTTACCTTGGGATGACAGGGAAAAGGATATCATCACCTGCTGATGCCCTTTTCTTTGGTCT
TGGAACTCATTATGTACCTTCAGCGAACCTGGGACCTCTCAGGGAATCCCTCTTGAGTGCTAAC
TTGTATGTTCCGAACTGTTATTTGGTAAAAACTTACTAAATGCTAGCAAGATCATTATGTTCTT
TTAATTACTACTAGCTGAATGCCCCTGCTTTGCTACTGAAAATAAATAAAAACATATTTTCCAT
GATATGTGTTACCCATCCTTTTTCTATAGGGAACATCCATCTTAATTTGATTTTATATGTGGCT
ATCCATTTAGATTCAAGGGGCAATTTGCAAAATTTACAATGGGAGTAGGTGGGATGTCAGATTC
ACTGCCTCCACCATTCCATTCTTTTAAAGAAGTATAAATTCCATAATTTTTCATTAATAGAATA
ATAGTGACACATTCAAAACTCGGTTATAATTCTGTTTGATAGTGTCTTGACATCTGATATCGTG
TTTTTTATTTTTGCAGCACAGATGATCCTCACAGAGATGTTGAGTCATTGCTGACAAAGTTCAA
GAACGAGCCAGAGTCAGGGCCCCAGCTAGATAAGTTTTTACCATATATCATTTCTTCCTTTGGT
CCTGACAAATCAGTTGCTGAATCTGTGGAAGAGCTTAAGAAGTGTAGTCAAAGTGATGATGCTG
CAGGTACTCTGCTTTTAAGCTAAGGCGTCAAGAGAATGTTGTTATATTTATGCACAAGTGCCAA
CAGTGTTTCTATATTGAGACCGTTTTATAAATTCAGTTTAGTACTGACTAGTTGCACGTGTATC
CTTTTCATTGTTGTCTGCAGTGGCAGAATGGGCCAACGAGGCCTTGGCAGGACTCAAAAAAGGG
GCTCCATTTTCTCTATGTTTAACTCAAAAACATTTTTCTCAAGTTGCATCAGCATATAGGAATA
ATGAACACTATCTATCGAAGGTATGACTGCTATCCTGTACAATTGAATACTTTTATTTGGTTAA
CTATTTTATTTTCAGGCTTCTCTTTTTCTTTTGCAAGGACATTGCTAATTCTGACATTTGGTTT
GTTCAGTTGGCTGGTGTTATGAAAGTTGAATATCGAATTGCCTTGAGGTCATCGGTTCGAAATG
ATTTTGTTGAAGGTGTACGTGCTGTCTTAGTTGACAAGGACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.222558041
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017