Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047540_circ_g.1 |
ID in PlantcircBase | zma_circ_010046 |
Alias | zma_circ_0003082 |
Organism | Zea mays |
Position | chr9: 134444229-134444984 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d047540 |
Parent gene annotation |
Guanine nucleotide exchange factor SPIKE 1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d047540_T029:2 Zm00001d047540_T024:2 Zm00001d047540_T014:2 Zm00001d047540_T008:2 Zm00001d047540_T036:2 Zm00001d047540_T002:2 Zm00001d047540_T034:2 Zm00001d047540_T013:2 Zm00001d047540_T005:2 Zm00001d047540_T012:2 Zm00001d047540_T009:2 Zm00001d047540_T011:2 Zm00001d047540_T031:2 Zm00001d047540_T003:2 Zm00001d047540_T006:2 Zm00001d047540_T033:2 Zm00001d047540_T015:2 Zm00001d047540_T025:2 Zm00001d047540_T001:2 Zm00001d047540_T010:2 Zm00001d047540_T007:2 Zm00001d047540_T004:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.335724504 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
134444894-134444466(+) 134444851-134444231(-) |
Potential amino acid sequence |
MLLVPAAAENFSVILNTSRLTAVLRFSSQSSKRACSRPASRAWTRHLERCFTSAQDHILSEEPS GAASNAVTGRPQSFNRSLLLTSAISSSDFLRRRASPLSSREPSDFI*(+) MGLLSRSQPLAFWKAFLPVVYNIFNLHGATLMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVV GLQILVRNAFNYFKNTTRLRVMLTITLSELLSDVQVTQMKSDGSLEESGEARRLRKSLEEMADV RSKDLLKDCGLPVTALEAAPDGSSDNMWSWAEVKHLSKCLVQALDAGLEHALLELWEENLSTAV SLEVLRITEKFSAAAGTRSITTDYAKLDCVTSIVMGLLSRSQPLAFWKAFLPVVYNIFNLHGAT LMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVVGLQILVRNAFNYFKNTTRLRVMLTITLSEL LSDVQVTQMKSDGSLEESGEARRLRKSLEEMADVRSKDLLKDCGLPVTALEAAPDGSSDNMWSW AEVKHLSKCLVQALDAGLEHALLELWEENLSTAVSLEVLRITEKFSAAAGTRSITTDYAKLDCV TSIVMGLLSRSQPLAFWKAFLPVVYNIFNLHGATLMARENDRFLKQIAFHLLRLAVFRNDSIRK RAVVGLQILVRNAFNYFKNTTRLRVMLTITLSELLSDVQVTQMKSDGSLEESGEARRLRKSLEE MADVRSKDLLKDCGLPVTALEAAPDGSSDNMWSWAEVKHLSKCLVQALDAGLEHALLELWEENL STAVSLEVLRITEKFSAAAGTRSITTDYAKLDCVTSIVMGLLSRSQPLAFWKAFLPVVYNIFNL HGATLMARENDRFLKQIAFHLLRLAVFRNDSIRKRAVVGLQILVRNAFNYFKNTTRLRVMLTIT LSELLSDVQVTQMKSDGSLEESGEARRLRKSLEEMADVRSKDLLKDCGLPVTALEAAPDGSSDN MWSWAEVKHLSKCLVQALDAGLEHALL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |