Detail information of BGIOSGA035482_circ_ig.1


General Information
CircRNA Name BGIOSGA035482_circ_ig.1
ID in PlantcircBase osi_circ_009137
Alias Chr11:24135640_24205013(MH63RS2), Chr11:24136068_24205770(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 18316642-18321161  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AA-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATATGCCTGTAAATAAGTAGAGTGGTGGTGAACTGGTGATTGATGAGACATCTAAAAATAT
TAACAAAACCCTAAATAGAATCTCGATGATGATTAAcaggattggcagaatcaggtcggtggga
gtccagcgcgacggaggggcgtcgttgctgtagaggccacgtgttggcattgcctgggagtcag
tgaggtag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGATTGGCAGAATCAGGTCGGTGGGAGTCCAGCGCGACGGAGGGGCGTCGTTGCTGTAGAGG
CCACGTGTTGGCATTGCCTGGGAGTCAGTGAGGTAGTGGCAAGAGGGGCATTGGTAGGTGCTAG
GCGAAAGCCGGCCCAATTCTTGGGCAGCAACGGCGACGTCGGGGGGCGTTGCAACCCTCTTGAG
GGCGTTGTTGAGGTGCCTCCCTCCCCCCCTTCAAGGATCCTCTAGGTGAAAACCTCATCCTTTC
GGGATGGGCGATGGCGGCGTATTGAATGTCGTGACCTTCTTGAAGGCATCGTGATGGAGGTGGC
CGTGTGTATCTCTCGGTGTGGTGGTGTGTAGGCACGTGGCCGGGTGTGTTTTCTCTAGTCGCGG
TTCCCCTGTCCCCTGCTGCTTTGTCCCTTGTTTGTTATGTCCGTTTGACTCCTCTTTATGCGTT
AATACGCTAGAAGCGTATTCCCTTGCAGTGAAGGATTGGCAGAATTCTGAGAATAAGTATCAGT
ATCATCTTTCCTATGACTTTGTTGATTGTGTCCATGTGTGTCATTTCCGTCCTCTGCACTGTCC
ACTTCGATGGGGACATGTTGTTTGGCAAATTGATTCTCAGTAACAGCAACATCATCATTACATA
TGTGCTCAGTACTCCAATCAGCATCAGATGGAGTATTATACTTCCTTTTCCTCTCAATATTAGA
GTTCATAGCACGGCTGCTGTCAGAGCTATCACAGAGCTTTCTCCGACCCAATATCTGAAGACTG
GATGATCCTGGAGCATTTGTCCCTGCTGATACACTTTCTCCAGTCAAATTCTGCACAGCGATGG
AGTTTGGATCAGGACTCCTTGGTACCAAAGTTCCGGGCATATCATTGTCAGCAGGAGGCACATG
AGATTTAGCTTGGCTAATTTCTGAAAATTGAACTCTGTCACTTCTTGTCACCAGGCCTTTACCT
TCCATGTCACCAGCCCAGCCATACTGTTTTATGGATTCATCAGTTTCTTCAGTATCTCTGGATT
TGCCAAAATCAAAGTCTGGATAAGGGTAGGCAATCACTGAATTGAGATACTTCTGAGCAGCAGT
ATCATTAACATTTTTCTGACAAGTTTGTTGGTTGCCTCCATGTCTTGCATTTCCTTCCTCTTCA
CTGTCCACTTCGATGGGAACATTCTGTCCAGTAGATTGATTATCAGGAACAGCAACATCATCAT
TACATATCTGCTCATTACTCGAATCAGAATCGGATGGACAAATATACTTCCTTTGCCTCTTAAT
ATTGGAGTTCATACCATGGCTGCTGTCAGAGGTAACATAGAGCTTTCTCTTACCCAATATCTGA
AAACTGGATGATTCTGCAGCATTTTCCTCTGCAGGTGCACTTTCTCTAGTCAAATTCTTAACAG
AGATGGAGTTTAGATCAGAACTCTTTGGTACCAAAGTTCCAGGCTTATCATTGTCAGAAGAGCA
GATGTGAGATTTAGTTTGCTTCATTGCTGAAAATTGAATGGCCTCGCTTCTTGTCACCAAGCAT
TTACCTTGTTGATGCTGATTACCATGCTGATTGGGGACACTACTTCGTTGAAATGAGAACATTT
CTGACGGTGAAAGCTGAGACCTTTTTGCAGCAGTTGATAGGATTCTTGAGGGCACAGACTGCTC
ACGCAGTTTGATTGCAAAGAACTTACCACAATCATTGCAGCGGGCCAAAAAGTTCCGTTGGTAG
TACAGAGATTGCTTCTGACAATGCGGACATATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATATATCTATCTATTATTCTATTATATTATTAAAACAGCTTTGAGAAAAAGGCACTACGTTC
GCTGTGGGGGCTAGAAATTCCCACATTAATCGGAGAAAAGAAGAAAAAAAATAGACCGTTAGAT
CATAGTAGATCTATATTATAGTGGTGTAGATTGATTGAGAGAGTTGTATATAAAATACAATCAT
TTATATGGAAATTTAAATTAAATAAGAGATACTCCTAGGCCCTGTTTGGTTTCATGGACTAATT
ATTAGCCCTCACATTTTAGCCCTGAATTAGCCCTCAAGGATCCAAACAGGTGGGCTAATTTGAG
GCTAAAGTGAATTAGCCCCCCTCAAAACATTAGACTCTCTATGGGGTGCTAATGGGTCTAATTG
GTTTGAGGACCATCAAAAAGCAGCTCTTTCTGTCCTCTCTTTCAACTCTCTCTCTCTCCACCTT
TTAGCTTTGAATTAGCCCATGGATCCAAAAATACCACCCTAGACTAATGTTTAGCCTACCAATT
TATGATTAAACATTAGCCCTGGGCTAATCTTCCAAACAGGGCCCTCATATATTTACGGGAAAAC
AATCCGAGTAGAACCAAGATAGTGCACCAAAACAAATACTACTGTGAATCAGTAATAAGCATGC
GTGAACAGAAATCCTATTTGGATTTTATGCAGTAATTTCCTCTCTCTTACTCCCTCGTTATAAT
CTCTATTATTATAAAAATTTAAGATGTTTTTGTCAAGATTTTGGTACGTCAGTTTGAGTAGGTT
TTTAATTATATCCGTCGTCAACCGCGTGGGAACCAGCAAACTTTCGAACTTAGTCCGACTCCAA
TTTTGGTCCATCCGTCCTTCGTCCATATGTCTCCCGCCCGCTCGCGCTCCTGTCCGTCTTGCCG
ATTTTTCTTTATTTCATTTCATGCGCGTTACCGATTCAGCTTCATGTCAGTATCCCTATGCATG
TGTCCCCGCACATCAACCAGCTATGAATCAAAGACTAATATGCGATATGTTGATCACCTGAGTG
ACACCCTCACCCTCAGCTTCTGTTCTTATTTCCTTTGCGCTTTACTTTCTAATCCTTTAAATTT
CGTCTTAAGCTTTTTCAATGTCAGTGCATATTTTGATTGATTACAGCATCATAGGTGCGAACGT
TGGGACTTTGTTTTTTCTTTATTCAAGTAGAGATTTGAGTGGGTTGGGTTTGAGTGTCCCGTCG
AGATCGTGTCCATGTGCGACTCAAAGTCTGTGTCATGGTCCGGTTTCAATTATTTTTGCATCAG
GGTGTTGTGAAAATAGAATAATTTACCTGGTGATATATGAAATAAACCGTTTTAAAAAAAAAAT
AGTTAGTGTTACCTTGATTGCATTCCCGCGTGACATAAAGTATATTTTATTAATGTGGTTGGAT
CACAACAGTTGAACACTGTTTAAAAGATTTACTTGGAGCACAGTGAAATAGATCGTTTTGAACA
TTATCTGCTATCTAGAGTTCTAGACAGATTGCGTTCACGCCAATATAAAGAATATTTTCTAAAA
GGTTTATCCTAATTTTAAGTTTTCCGTAGCAACGCACGGGTATTTTTTCTAGTAAATAATAAAA
AAGAAAAGAAGAATCTATATAGAAATATAATTTAAAAATAACTGAAATTCGTAATTAAAAATTA
AGCAATATTAGAAGAAGAGTCTATATAAAAACCCAATATAAGATTAAATAAAATTTGAAATAAA
AAAATAAAATAAAATTATAAAAATCAAACATAGAAATATATACGATCTGACTTGGATCGGACTC
CTAACCAAGGCAGCTTAATTTGAATAGGACTTATTGTCCGATTGAGGCAACTCAGCCTTTTCTT
TTCTTCAGAGAAGCACTTCTTTTTATGTACCCTAGCAGCGCTTCAAATTAACGTAAGTATATAC
ATCACTTATGTAAAGTGATTATTGCCGCCATTACTACCGCCAAGTACGTACCGTACAGATTAAA
AACAAATGAAACACAATGCGGGATTAAACTAAATTTAAATACGAATTCTAAATCAAAAAAATCA
TAATAAAAATAAATTAAAACTAGCTTAGATACGTTCAGAAGTTCAGGACTGTACTACTCTTTAT
ACAAATTATAAATCGTCAAAATTAGGAGTAAATACATTAAAAGAAGGGTCCATGTAAAATAATA
CTCAAAATAGCTATTTTCATTTAGTAAGTATTTATACACAGTGACGCATCGTAAATCACAGTCA
CGTAATTTATATATGATTTGATCCCAGTAATCATATTATATTTTTAAGAGGGCAAGTGGAGGGG
TGGCAAAGGAATAGGGTAATGGCAGGTTCGATTTTTAAAATCTTAATGATAATAAATAGTAAGG
GCAATGGGCTAACCGTAAAGGAGTATGGCGGCGGCAGTTGAGGGTCTCCTAAAAATTATAAAAA
CNAAACTCAACGAGAAACACTAAAAACCACGTGGTCAAATTTTTAAAGGTTCCAAGAAGAATAA
AAGTAGTGGTAGATTGAGCAAGCAAATAAAGCATGACNAAGAACTAAGATCGGAATAAAAAAAT
ATGGAATTTTTTTTAAAAAAGAAGTCCATCTCTAAAACAACGATGACAAATAACAATAAAGAGG
GAAGATAATATGCCTGTAAATAAGTAGAGTGGTGGTGAACTGGTGATTGATGAGACATCTAAAA
ATATTAACAAAACCCTAAATAGAATCTCGATGATGATTAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021