Detail information of orai.009G157900_circ_g.1


General Information
CircRNA Name orai.009G157900_circ_g.1
ID in PlantcircBase gra_circ_000945
Alias Chr09:12117356|12119427
Organism Gossypium raimondii
Position chrChr09: 12117356-12119427  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.009G157900
Parent gene annotation NA
Parent gene strand -
Alternative splicing orai.009G157900_circ_g.2 orai.009G157900_circ_g.3
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.009G157900.4:5
Gorai.009G157900.2:5
Gorai.009G157900.3:5
Gorai.009G157900.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAGAGGTGCATTGCCCTCCGCATCTTGATGGAGATTATTTAGATCAGATGTGATAACATCAA
GAGATTGGTAACTCTGATCCGTATCATTTAAGTTCActggaggagaattagccattggggaatc
aacttgatgtctaaaaccccgagactcttcttgttcaagctcttgacttaggtgcagcatcaag
ctagaagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 990
Transcript exons: 12117356-12117447,12117950-12118101,12118199-12118315,12
118413-12118571,12118958-12119427
CTGGAGGAGAATTAGCCATTGGGGAATCAACTTGATGTCTAAAACCCCGAGACTCTTCTTGTTC
AAGCTCTTGACTTAGGTGCAGCATCAAGCTGCGACGAGCTCCTCCAGGGCGACTAGGTTCAAGC
TTAATTCGTTTACCAGCTATGTCACTTCTATTAAGTGACTTAAGAGCTTGTTCTGCAGCTCTAA
CATCATAAAACTCAATGAACTTATGGTGTCTTTTGTGTGGCGTTTCCCTTATCTCTTTAACCTC
GCCATAAACCCCAAATATTTGAAGAAGATCTTCATTTGAAACTGATGGGTCCAAATTAAAAACT
ACCAAAGTTCCTTGATTAATATCCTTCTCTGATGGATTATCCTTAGGAATTGAAAAGTGAATGT
CAAGTTTTCTCCGTCTTAATGGCTTGTTCTGTAATGCACGCATAGCTGTTCGAGCAGCACGAAT
GTCATAATAGGATATCATCACAAAGCCTCGGTGTTTACATGCAGTGTACAGAGTTCTAATATCA
CCATATTGCTCAAAAAGAGCTCGTAGTTCTGAATCCTCGACATTACTATTTATGTTCCGAACAA
ATAATGTCCTTGAAGGATGTTCCCCATATGGATGTTCCCCAGCAATGGTTCCAACACCATTTGG
AAGACTATAATGGGGTACGCTATTTCCAACAACAGCATCAGCAAGACTCACTTTTGCCATGCCA
ATGGTCAGACTCTCTTGTGGATCAACTTCCAGTTCCATGCCTCCTCCGCTACCAAAAAGATCAC
ACTCCTCCAAATCTTCAACTGAACTAGGCAAACCACTTAAGTCAAAGTCATCCATTATGCCTGC
TAAAAGTTCATTCTCATCATCAGGAAGCAAGTTTCCAAGTGCATTAGCTTTGATGTCTCCCAGA
GGTGCATTGCCCTCCGCATCTTGATGGAGATTATTTAGATCAGATGTGATAACATCAAGAGATT
GGTAACTCTGATCCGTATCATTTAAGTTCA

Genomic sequence CTGGAGGAGAATTAGCCATTGGGGAATCAACTTGATGTCTAAAACCCCGAGACTCTTCTTGTTC
AAGCTCTTGACTTAGGTGCAGCATCAAGCTAGAAGTTCAAAAAGATAATAAAAATTTATCATTG
CCATACTTCCAAAAACAACAAAGAAAGGAATCAAACAAGCAAATTTGAATAGAGAGTGTGTTGA
TCAAGCATGATGCAGCTAAGATTAAGGATCCAGGTAACCACAGTCCTGCAAGGCCATAACTAAA
GTAGTTCCCATTGTTTTGGTTCCCTTTGATGGCCTAAATTTATAATCTAAGTAGTTTACCTCAT
CCAATTACAACCAATGCATACATGTAAAAATTTAACACTGTAGCAAAATTGCACACATGCAGAA
ACTGATTTGCTCTCTTGCCCAAGTGCCAGAAGAATAAATAGAAGCCACTATCAGGTTACACTCA
GACAAATGCACACTCCAATGCTCTCATAGTGCCAACATAATGACAACGAACTTATTTCAAATGG
AAAACATGATTATCAAATAAATAAATATTAAAATTTTTATAAATTAGTATTAATAGAAGAATAA
AGCCTAAGATATACCCACCTGCGACGAGCTCCTCCAGGGCGACTAGGTTCAAGCTTAATTCGTT
TACCAGCTATGTCACTTCTATTAAGTGACTTAAGAGCTTGTTCTGCAGCTCTAACATCATAAAA
CTCAATGAACTTATGGTGTCTTTTGTGTGGCGTTTCCCTTATCTGCTTTTACACAATGAATAAA
GCATTACAGAAAGGTTAAACATGCAGCCTCAGGTTAGAAGCAAGGAAAATATTTTGAATAAGGA
AAAAGCATCACCTCTTTAACCTCGCCATAAACCCCAAATATTTGAAGAAGATCTTCATTTGAAA
CTGATGGGTCCAAATTAAAAACTACCAAAGTTCCTTGATTAATATCCTTCTCTGATGGATTATC
CTGGTGAGGTTAGGAGAAAAAAGTAAAATGGAGAGGCGGTTATTAACGAAAACAATTTGATAAA
ACAAATTATTGGGATTAAAAAAATGCTCTAGACCTTAGGAATTGAAAAGTGAATGTCAAGTTTT
CTCCGTCTTAATGGCTTGTTCTGTAATGCACGCATAGCTGTTCGAGCAGCACGAATGTCATAAT
AGGATATCATCACAAAGCCTCGGTGTTTACATGCAGTGTACAGAGTTCTAATATCACCATATTG
CTGCAAAAAGGGGGAAATATTATAGCACTCAGATTAGAAAGATAGGAAGTAACTTGAATTAGTT
CTCAAACCCTCATAGGAGTTAAGAAACAACAGGTTTGGATCAACAACAGCAGTCCAACAATTCA
AACTCACACTTCAGAATTTAAAGGGACGTGTTTAACTCTAAAATACATGCAATACTTTTAGCTC
AAAAACTGGAAGGTATTACATAGTCAATTGCAGCATCTAAAACCTACATTTTTGGTTCTAAAGG
CAATGTATTCTTTCTAGCAATGCATATGTCAAAAAGGAAACAAAATAATGTAAACGTTTAGAAA
AGCAGGATACAATTTTACTAGCAGCCCTAAGGTCATATCATCAGAAGAATTTTAAGATTCAATT
ACCTCAAAAAGAGCTCGTAGTTCTGAATCCTCGACATTACTATTTATGTTCCGAACAAATAATG
TCCTTGAAGGATGTTCCCCATATGGATGTTCCCCAGCAATGGTTCCAACACCATTTGGAAGACT
ATAATGGGGTACGCTATTTCCAACAACAGCATCAGCAAGACTCACTTTTGCCATGCCAATGGTC
AGACTCTCTTGTGGATCAACTTCCAGTTCCATGCCTCCTCCGCTACCAAAAAGATCACACTCCT
CCAAATCTTCAACTGAACTAGGCAAACCACTTAAGTCAAAGTCATCCATTATGCCTGCTAAAAG
TTCATTCTCATCATCAGGAAGCAAGTTTCCAAGTGCATTAGCTTTGATGTCTCCCAGAGGTGCA
TTGCCCTCCGCATCTTGATGGAGATTATTTAGATCAGATGTGATAACATCAAGAGATTGGTAAC
TCTGATCCGTATCATTTAAGTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.554458201
Functional Information
Coding potential Y
Potential coding position 12119261-12117358(-)
Potential amino acid sequence MDDFDLSGLPSSVEDLEECDLFGSGGGMELEVDPQESLTIGMAKVSLADAVVGNSVPHYSLPNG
VGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRA
ARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNEDLLQIFGVYGEVK
EIRETPHKRHHKFIEFYDVRAAEQALKSLNRSDIAGKRIKLEPSRPGGARRSLMLHLSQELEQE
ESRGFRHQVDSPMANSPPVNLNDTDQSYQSLDVITSDLNNLHQDAEGNAPLGDIKANALGNLLP
DDENELLAGIMDDFDLSGLPSSVEDLEECDLFGSGGGMELEVDPQESLTIGMAKVSLADAVVGN
SVPHYSLPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF
VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNEDLL
QIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSLNRSDIAGKRIKLEPSRPGGARRSLM
LHLSQELEQEESRGFRHQVDSPMANSPPVNLNDTDQSYQSLDVITSDLNNLHQDAEGNAPLGDI
KANALGNLLPDDENELLAGIMDDFDLSGLPSSVEDLEECDLFGSGGGMELEVDPQESLTIGMAK
VSLADAVVGNSVPHYSLPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT
LYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNL
DPSVSNEDLLQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSLNRSDIAGKRIKLEPS
RPGGARRSLMLHLSQELEQEESRGFRHQVDSPMANSPPVNLNDTDQSYQSLDVITSDLNNLHQD
AEGNAPLGDIKANALGNLLPDDENELLAGIMDDFDLSGLPSSVEDLEECDLFGSGGGMELEVDP
QESLTIGMAKVSLADAVVGNSVPHYSLPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRA
LFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDI
NQGTLVVFNLDPSVSNEDLLQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAAEQALKSLNRSDI
AGKRIKLEPSRPGGARRSLMLHLSQELEQEESRGFRHQVDSPMANSPP(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b