Detail information of Os02g0317300_circ_g.2


General Information
CircRNA Name Os02g0317300_circ_g.2
ID in PlantcircBase osa_circ_014455
Alias NA
Organism Oryza sativa
Position chr2: 12601459-12603782  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os02g0317300
Parent gene annotation Cyclin-like F-box domain containing protein. (Os02t0317300-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTACAACACAGCATGAGAGGTAAACTAATGCGTCCAATGCGTCCTATTCAACATGCAAGAAGC
AGAAATGCAATAGGAAGGGGGAAATGCTGCTGCCACtaagtggacaaaataagaaaggtaactt
atagaacattcatggtagaaataagtaaaatggtccattaagtaaagtactgggtgcagaaaca
ttgataat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2324
Transcript exons: 12601459-12603782
TAAGTGGACAAAATAAGAAAGGTAACTTATAGAACATTCATGGTAGAAATAAGTAAAATGGTCC
ATTAAGTAAAGTACTGGGTGCAGAAACATTGATAATAATCAGAGCAGTATACACAACCTGCTGG
ATGCCTAACTAGCTTCAACACACAGTTATAAAAATTAACATCACCTGCGGATGTCATTATATCA
CAATGTCAAACCATAGAAAGTTAGGAACAATACATAGAAGAATGAACGAACTATCCATATCATA
GAGACAACATAATCTCAGCTACTAACTAACAATTCTATGTCTCTAGAGCTAGTAGTCTAGATGA
CCAGATGAAACAAAATAATCCATGCATACTAAGCTGGATGATAAACTGTGTATTGGTTGCTGTG
CTGTCAAAAGGCCAATTTCTTCAGTGATAACAAACCTACACTATGCTATGTTAATATTGGTCAT
GACTTAAACCAAGGCATAACCAAAATAGTGGGAATACAAGTTCATTTGGATTGCAACCATACTG
TTTGCCCTTTTATTTAGTAAAATCGCTAGGGTGGGAGCTGGATCAATGAAATATATTGGCAGTT
TAATAACCATGCTAGTGCTTTTCTGATTGTTTGTCCTTCATTGATTGTATTTATTTTGAAAACT
AATCAAATAATCACACCATGCAGTAAAGAACAAAGGATATTGTAAAAGTGTGAGAAGTGATTCG
ATTTATCCAAAATTTTGGCGAAGATTCCACTACACACATCTCAGCCAATATTTACAGGAAGGAC
AAGGGCAAGACCTATCGGTGGGCATGCTAAAATTTGGTATGCATCCAAGCAGTAGCCAAAAACA
TGGGGGGTATCACCAACACTTTGGCAGGCCTGGCTTAGGCATTTCGTAAAGTTCAACAATTTAC
ATCAGGCTCTTGTTACAAACAATCCTAACATGATAAAAAAAATGAGCAACCTCACTCTAATGTT
CTTCCTTAAATGCATACGGTTGTTTTGGAAATGTCCTTACAAATTCTAAAGTGAATCGATAACA
GGATGTGTGTTTTGGAGGTTACCAAGTTATATACGCTCTACATATTACTGTGGAACAAGAGAGA
TATGATCTGGAGTTCTTGTCTGTCAGACCACCTGCCTTTAGGTGAAGAACATAAACAGGAAAAG
GCAAATAAGTGTTACTTAATTAAACCACAACTAACAAAGTTTACAAGGGTCTTGCACAATAGGT
AGTACATAAGGAGAGAGCCAGCATCTAGCATGTGATTTTCTATCAATGAATGGATTGAACTTTC
CAGGACATGCTATGGTACCTCCGTTCAAAAACAGATGTCATTTAACCATATAGGCAGTGAAACC
TTTAACATAATATTAAATTTGTCATCCAAAGTACACCAAAATCATTATATTTGTAAAACTAGCA
TTAACGCATATATAACCATAAAAAGTAGTACCAAAGCTGTGTATTGCATACTGTGCTGTCAAGA
GACTTTCTTCAATTATAACAAATCTCTACAATGCCACCCCGCATACGTGTCGATGCTATGTTAT
AGGGATGTCTAACTGTATAAGGGAACATGTTTGGTACAAATGAAAGTGCATCATGTCAGTATGA
TTTAGGAATTCATAAGGAGTTGAATGCAGTTGCCTATAAGTTTGTCCAAAGTTAGGAACTAAAC
AATATCTTGCTCTATGGAGGCAAGATAGATGCAGGAGTAGGACTACAGACATAAGCAATTTTCT
GGTACAAAAACTGGATTATCACTAAAATAACATTAAGCTCTGATTGATTTATTTCATATGTGAA
AAAAAAAATTTAGATGACCTGCAGTACTACTGGATCAGTTCAGACTTCAGACTCCCAAGCCTCA
GCATGTTTATTTGATCCTTCTTCTATATGAATAACTACCAGCCATTTCTAGAGTTTTTGGGAAG
GTTAGTACAACTTGCTCATTTCCATCAGGAATTACTTAGAACAAACAAATTAAAGGCGACATGA
ACAAAAGTTCACATTCAAATAGAGAAACATTATTGAAAATTCCAAACAAACACAGATAATTTAA
AGAACAGTGGTTCCATGGTTGAAATTAATAAGAGAAGGGTTAACTTTAGTAAATGTAAATAACA
GGTTAACTTTCTCCTACCAATCCAACTTACTGAGATCTTAATTTTCACAAACAGAGCCGTTAAA
TAAAACATTGTACAGAGTTCATCCAGATTGGCTAAGATCGCACAAAACAGTACAACACAGCATG
AGAGGTAAACTAATGCGTCCAATGCGTCCTATTCAACATGCAAGAAGCAGAAATGCAATAGGAA
GGGGGAAATGCTGCTGCCAC

Genomic sequence TAAGTGGACAAAATAAGAAAGGTAACTTATAGAACATTCATGGTAGAAATAAGTAAAATGGTCC
ATTAAGTAAAGTACTGGGTGCAGAAACATTGATAATAATCAGAGCAGTATACACAACCTGCTGG
ATGCCTAACTAGCTTCAACACACAGTTATAAAAATTAACATCACCTGCGGATGTCATTATATCA
CAATGTCAAACCATAGAAAGTTAGGAACAATACATAGAAGAATGAACGAACTATCCATATCATA
GAGACAACATAATCTCAGCTACTAACTAACAATTCTATGTCTCTAGAGCTAGTAGTCTAGATGA
CCAGATGAAACAAAATAATCCATGCATACTAAGCTGGATGATAAACTGTGTATTGGTTGCTGTG
CTGTCAAAAGGCCAATTTCTTCAGTGATAACAAACCTACACTATGCTATGTTAATATTGGTCAT
GACTTAAACCAAGGCATAACCAAAATAGTGGGAATACAAGTTCATTTGGATTGCAACCATACTG
TTTGCCCTTTTATTTAGTAAAATCGCTAGGGTGGGAGCTGGATCAATGAAATATATTGGCAGTT
TAATAACCATGCTAGTGCTTTTCTGATTGTTTGTCCTTCATTGATTGTATTTATTTTGAAAACT
AATCAAATAATCACACCATGCAGTAAAGAACAAAGGATATTGTAAAAGTGTGAGAAGTGATTCG
ATTTATCCAAAATTTTGGCGAAGATTCCACTACACACATCTCAGCCAATATTTACAGGAAGGAC
AAGGGCAAGACCTATCGGTGGGCATGCTAAAATTTGGTATGCATCCAAGCAGTAGCCAAAAACA
TGGGGGGTATCACCAACACTTTGGCAGGCCTGGCTTAGGCATTTCGTAAAGTTCAACAATTTAC
ATCAGGCTCTTGTTACAAACAATCCTAACATGATAAAAAAAATGAGCAACCTCACTCTAATGTT
CTTCCTTAAATGCATACGGTTGTTTTGGAAATGTCCTTACAAATTCTAAAGTGAATCGATAACA
GGATGTGTGTTTTGGAGGTTACCAAGTTATATACGCTCTACATATTACTGTGGAACAAGAGAGA
TATGATCTGGAGTTCTTGTCTGTCAGACCACCTGCCTTTAGGTGAAGAACATAAACAGGAAAAG
GCAAATAAGTGTTACTTAATTAAACCACAACTAACAAAGTTTACAAGGGTCTTGCACAATAGGT
AGTACATAAGGAGAGAGCCAGCATCTAGCATGTGATTTTCTATCAATGAATGGATTGAACTTTC
CAGGACATGCTATGGTACCTCCGTTCAAAAACAGATGTCATTTAACCATATAGGCAGTGAAACC
TTTAACATAATATTAAATTTGTCATCCAAAGTACACCAAAATCATTATATTTGTAAAACTAGCA
TTAACGCATATATAACCATAAAAAGTAGTACCAAAGCTGTGTATTGCATACTGTGCTGTCAAGA
GACTTTCTTCAATTATAACAAATCTCTACAATGCCACCCCGCATACGTGTCGATGCTATGTTAT
AGGGATGTCTAACTGTATAAGGGAACATGTTTGGTACAAATGAAAGTGCATCATGTCAGTATGA
TTTAGGAATTCATAAGGAGTTGAATGCAGTTGCCTATAAGTTTGTCCAAAGTTAGGAACTAAAC
AATATCTTGCTCTATGGAGGCAAGATAGATGCAGGAGTAGGACTACAGACATAAGCAATTTTCT
GGTACAAAAACTGGATTATCACTAAAATAACATTAAGCTCTGATTGATTTATTTCATATGTGAA
AAAAAAAATTTAGATGACCTGCAGTACTACTGGATCAGTTCAGACTTCAGACTCCCAAGCCTCA
GCATGTTTATTTGATCCTTCTTCTATATGAATAACTACCAGCCATTTCTAGAGTTTTTGGGAAG
GTTAGTACAACTTGCTCATTTCCATCAGGAATTACTTAGAACAAACAAATTAAAGGCGACATGA
ACAAAAGTTCACATTCAAATAGAGAAACATTATTGAAAATTCCAAACAAACACAGATAATTTAA
AGAACAGTGGTTCCATGGTTGAAATTAATAAGAGAAGGGTTAACTTTAGTAAATGTAAATAACA
GGTTAACTTTCTCCTACCAATCCAACTTACTGAGATCTTAATTTTCACAAACAGAGCCGTTAAA
TAAAACATTGTACAGAGTTCATCCAGATTGGCTAAGATCGCACAAAACAGTACAACACAGCATG
AGAGGTAAACTAATGCGTCCAATGCGTCCTATTCAACATGCAAGAAGCAGAAATGCAATAGGAA
GGGGGAAATGCTGCTGCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.312841688
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017