Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d017186_circ_g.4 |
ID in PlantcircBase | zma_circ_008745 |
Alias | zma_circ_0001947, GRMZM2G035584_C1 |
Organism | Zea mays |
Position | chr5: 188277169-188277606 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d017186 |
Parent gene annotation |
Shikimate O-hydroxycinnamoyltransferase |
Parent gene strand | - |
Alternative splicing | Zm00001d017186_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d017186_T003:1 Zm00001d017186_T001:1 Zm00001d017186_T002:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.357542376 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
188277608-188277171(-) |
Potential amino acid sequence |
MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRREDADGNDLAGADGSFFDGAR MRRALAEALVPFYPMAGRLARDEDGRVEIDCNAGGVLFQEADAPDATIDYFGDFAPTMELKRLI PTVDFTDDISSFPLLVLQMKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRED ADGNDLAGADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAGGVLFQEADAPDA TIDYFGDFAPTMELKRLIPTVDFTDDISSFPLLVLQMKITVRGSEMVYPAAETPRRRLWNSGPD LVVPRFHTPSVYFFRREDADGNDLAGADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVE IDCNAGGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFTDDISSFPLLVLQMKITVRGSEM VYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRREDADGNDLAGADGSFFDGARMRRALAEALV PFYPMAGRLARDEDGRVEIDCNAGGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFTDDIS SFPLLVLQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |