Detail information of BGIOSGA030066_circ_g.3


General Information
CircRNA Name BGIOSGA030066_circ_g.3
ID in PlantcircBase osi_circ_018879
Alias Chr09:7151659_7155521(MH63RS2), Chr09:6166843_6170712(ZS97RS2), Chr09:7151659_7155521(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 5905293-5907808  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA030066
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA030066_circ_g.1 BGIOSGA030066_circ_g.2 BGIOSGA030066_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA030066-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAACCAGGTTCCTATTTTACATTTACTTACATAAACAATCATTTGCCTCTAAAAGTGGGGTT
CCATGTATAGTACTGAGAGTCTATGGTATGCTTCACcaattgagaagaatatgaagcccacatg
agaccagctatgttcttccatggcaatatcaaagcccatataaatgaacctgaaaaatgaattc
aggaattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATTGAGAAGAATATGAAGCCCACATGAGACCAGCTATGTTCTTCCATGGCAATATCAAAGCC
CATATAAATGAACCTGAAAAATGAATTCAGGAATTGTCCATTAAGAGCAAAAGGGAATGGTTGT
TTTTATATTACTCAAACAAAGCTCCTGAGCTTACACAAATGTTTCTGCTAAAGATGACAGCAAG
TGAAAGAAGGCAGAAACGAAGCGCTGAGAGTTGTTTGAGAGATTGGAAAATGTATAGTGCTTCA
TAACCTGAGAAAAAAAAATAGCAAGTATGATTCCAAGAGACATAGCCATGGTGTGCAGATATGG
TTTTTCATATAATAAGCTATTTTGCAATATTGCATATTGTACTTACCATTCCTGTGAATAGTAT
GGAAACAATTCCTGACAACCCAAGTCCTTCTGCTAACATATACCTAGAATTGATACGAAATATT
TTAATAAAAAAGGTATAGAAGAAGGGTAGAGTGAAGTATTTAAGTGTCCTTACGAGAAGTATGG
GAAGAGAACAAAAAGGCAGCACTCCAAGTTTTGAAGACTGAAACCGTTAACAATTCAGCAGGCT
TAGACTGGCAACATATTTCGTATGAAATCATGAAAAAGTCTATGAACTAAAAGCAGGTAGCATG
ATATGACTTACTTGTCAATATCCAGTCCAGCATACTTAAACAGGTACACAGAGTGGTCAAGGTT
GCACAAGATCAAGTAGTAAATAAAATAATTTACCGTAAAACAAGCAATGAGTAAATGGTAAATA
GTAATACATAAATATTGCAATTTAACACTATTACAAAGAAAAAAATAATGCATTTTACACAAAG
CTATAAGGAGCCAAGGACTGATAACACAACTGCCACTAAAAAGCATATGAAGATTTAGCTAACA
TTCAATAAAGCAATGGAAAACATGACCATAAGAAGAAAATGAATATTGCAATTTAGATTCTACC
ATGTTTTCTTTGTTGCTGCTAATCTAAGAGAAGAACATTTCTTGTGAAAGTTGTTTAAAGAGGA
AGATTTTGAATTGGTATATGAAGATAAGATTAAACACACACTGGTCAATACTAAGCATGCATAG
TCTTTCATGTTTTGCAAACAGAGTTTCCATGTAGAACTTAGGAAAAGGATATAAGAGCAGAGAT
AAATCCAACTCCAACACCTGCAATCCGACAAATGGAATGGTTACATGAGCTAATGAATTGACAA
TGACTATGAAAGGGACTAGATCAGTTCGAATTAGTGATGGAGAATATATCGTTGTCCAGAAAAT
TTCAACCCCGAGTAAAAGCAGGTACATATTTTCCGGGCATCTACGGTATAAAACTAAATTTTGG
TATTTGATCATCAGAGTCTAGTTCCTCAAAAGGGAGAACGTTTATGACTAAACTTGCTAGAGCA
TTTTTGCTAACATGAAGGGGTAGCATATTATATAAGATCCAGCCATTAATACTGTGCCCTGCTG
TGCTGTTATGTACCATACATTAAAACATTGTTTTTACCTATTCTAGTAAAATAATTCTTATATT
GCTCTAAAATATATGATGTTCATTAGCTTGCATCAAACAGAACCAATTTTAGAAGGCAACCACA
ATGCCAAAGGTCCCTTTGAAATAGTTGAGAATATTCTGAGCTGTGATGCAACCTGATGACAATG
AACCAACAAAGGTCTCAAGGAACTGGAAAACCATCATAAAGAAGTTCTCCCCAGCTGCTGCTTG
ACTTCTGACCAATGACATTGTCCTGAACAAAAGGATAGATATAAGCAAGAAATGCATATGTCAA
AAGAATTATATGTAATTGAAAGAGACAGACCTGTAAAGCGAAATCGCCATCTGCACTATCCAAA
TAAGATATGCATGTTAGTCATAAACAAAAGTAATTACTACTATTGCATGCACTCGAAAGAAGTA
AAAACAAACCGCATCATTTAGAACAGATTCTCCAAACACAAGAGCATACAAGTTAACATCAGTG
CCCAGCTCCTGCATGGAATAATTTCAGGAGATGCATCATTAGTTCAGATTCCCAACATCCATAT
GGCCACTAATCCTCCAACATTTTTTAATATGCCATATTTAAACAATGGAACATCTTTAAAAAAA
ACATTGGCTAAGGACATATATCAAAGTACATAAAAAATAATAATAATGGCTGCATGCACTGATT
CAGTATGTTACACTAAATATACAGTAACTTTACCACCACAAACTTCTGTTGTAAATTCTGATGG
TGCATCAAAATCTAGTAGTAATGATCTGTTTTCAAGTTCAAGCCAAATGCTACCAAAAATATGG
TACAACACTGAAACTACAACAAAACAGTGTTACGAGTTTAGCACATTTTTTATCAATTACCTGG
GCATTAGGATAATATTTGCTTTCAGAATGTTTCATATTCATTTAGCATTGCAACCAGGTTCCTA
TTTTACATTTACTTACATAAACAATCATTTGCCTCTAAAAGTGGGGTTCCATGTATAGTACTGA
GAGTCTATGGTATGCTTCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5498
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021