Detail information of Csa2G424730_circ_g.1


General Information
CircRNA Name Csa2G424730_circ_g.1
ID in PlantcircBase csa_circ_001288
Alias Chr2:22078427_22082122
Organism Cucumis sativus
Position chrChr2: 22078427-22082122  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G424730
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa2G424730.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTTTAAGTTACTCACCTGATATGAAGTACGAAAACCAAGAACACCTGTAATAGAAAGCTCA
AGACCAGATTCCACTTCAGCCGACTCAAAATGTTGCcacagggttttggaggtctcatagtccc
ctctgttgtatgcactacgagcaagggatcgctgtaaaatataagaaactaaagaatcaaaaca
cagaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACAGGGTTTTGGAGGTCTCATAGTCCCCTCTGTTGTATGCACTACGAGCAAGGGATCGCTGTA
AAATATAAGAAACTAAAGAATCAAAACACAGAACATACTTGAGAAGACATTTATATAATGATGC
AACCAAATCACCTTAGCTCGAGCTGATCTATTATTTGAAACTTCCAGGGCTTTCTCATAGCAGG
CATCACTATTTGTAACATCACCCAATGAGCACCTACGATTAAATTTTTTTAAATGAAAGTGAGG
ACTGAGGAAGATAGTTCGAATCCATGCTACCCACCCCTAACTCACCTTCATAGCCCAAAATTAT
GACAAATATATATGTTATAATAATTAGTCGAGGGTATAGGATTTTTTACACGAAGAACCAATTG
ACATAACAGGCCAGAAAAACTGTTTCAAGTTCTAACCCAAAAGAAAAAAATATAATAAACAACT
AGACAATGAGGACTACAAACTGAATCAACCAAAAGGGCAGGGTTAAGGAAAGACAGGAAAATCA
CTAACCAGAGTTTGGGATCATTGGGCATTTGAGAAAGTCGACTTTTGATGAGATCTACAGCCGC
TGCTTTCTTCTCTAATAAGCTGTTAATTAAATGAATTATCGTGAGATTGTAACTGGGAAACGAG
AAGTAAAGTTGAGATGCAAGTGCAGTTGATTATTGAAAACAAAATCACCATACCGGTAACAGAA
AATTAAGTTATCCCACAACTCCAACTCCTCAAATATTTTAACTGCCTCTCCAATTAAACCGCAG
CTCACTAAAAGTTCACCATATTCTCTGAAATTCAAGTTGAGCACCATAACCAATCAAGATGTAA
TAAATATGGGATTTGAAATCTAGAAACTTCAAACTTCTATAACAATCATGACAAAGGGTGGTGT
AAAAGACTTACTTCCGCAAAGCAGGAAAAGTAGGAACATAAACCCCGCAACAGAAAAACATCCT
TTGCACCACTCCTGGATAGCAATCATAATAACCCTCAACCTGAAAAAAATGAAAATTATTGATG
AGAGACATCAAACTAAACATAACGAAGATGATAGATATGACTTGTGGTTGTGGTGTACAGCAGA
AAGCACAGTGGCACACTATCAGACTCAGAAACTAAGAGGTAAGAATACAAAAAAAAAAAGATAA
TACGAAACCTACAGTGCCACTTTTTCATCAAGGAGCCAAGCTTTCTTAACATAAAATAGAAACA
AAAGTTCAAGACTACAGACCATTTACAGAGTCAAGGTTCTAATGACAGCAGGCGATCAAATGAG
AAAAGAACTTGAGTAACAAATAAATCAATAACCAATTAATGGTGAAAAAGTTGTATTGAGAACT
GCTCAAATTAGGAAGAAAAATGCACCTCGTACCAATTTTTCCATCATCACTAAAGCACGCTCCT
TTGTACGACTACGGCTGGACTCCCATCGAACTCGCAAGATGTTGCAGAAAAACCTCACCTGAAA
ATGATTGGGAACATACACCAGAATTAAATCAAGTGAAAAGGCCAAGTGCCAAAAATGAACAGAT
TGGTCGATTGAGAAATTCCAAACATTAGAAAGGTCAAGATTATAGAGTAACAGAAAAAAATGAA
ATTTGACAAATTGCATGAGTATAGAAATTAAAAAATCACCAAAGTAAAACCAAAATGAACAATC
TGAGAGTACACATATAACTAAGACCATCTAAGAAATTACCTGCAGTTATCAGATGAGAGCAACT
AGCCCTATATTTTCTAGCAATAATGTACAAAAATAAATCTAGACTGAAAAATCATGGCTCCAAA
AGAAAATTCATCTTTTAACAAACAGTTCAGTTAACAATCATACAAAAAAGGTAAGGGAGAGTGT
ATTGAAGTCCTGCAATTAACTAATTAAGTAGAAAAAAGATGCCAAGATACGCTCTGTAATGTAT
TGAGATAAAAATACACATCTTTCATAACAGATGTAATTAGGTAATGAAATAAGTTTATTCTCAC
CATAAACAATGATGACTGCTGAGTGTCAATAGCTTCTATATATGGAGCCATATCCCACCCTGCA
TACAATAAAAATCGCTCAGAATATCACACAAAAATGAAACATTAAAGATCAATACTGATTAAGC
AGATTTGGCATGCAATACAACGAACGGTTTGAAACTGGTGTCAGATTGCAGATATCCAATCAAT
TACACTAGTACCAAAATTGAGTTCAAACTTCAAATCATTTTGCTTAATATTTAAGATAATGTCG
CTCAAATAAAAATGTTTTTGAACGACGGTTTCCATTCAATATTTAAAAAATAAAATAAATAAAT
AAAAGTATTATATATATATGTTCTAGCTATTTGCCAATAACTTGATATCAAAAGTTTCTTTAGT
TTAAGAGGAAAATTTAGAATTCCACTTTAAAAAAAATGGTATGTCCTTCATAAATACATGATAG
AAAATAATTAGTCAAAAGTAAATTATCATATTATTTACACTGCTTAATCAATTAGCATGTTACA
TTATATTCAAATAAGCAGCATGCCAAACATAGACGAATAAAGAATTTTTTAATTAATGTATACA
AATATAGCACCCAGTAACTCTAATTTCACAATCATAACTGATTAAAAGTTATACATTAATCAGA
TACCCCTCAAGCAATACAATAATTTTAGGGAAATTAAACAATCATGTACAGTTCAGGCAAAACT
CTATCGCTATAAGCTTCCATCACAATCATGATAAAGAAGAATTCATATATCTTTTCAAAAGTGC
AAGCCGATCATTTTTCCAATTCATTTATCATAATTAAGGCCATAGTTCACTTGATCTATGGGGT
GCAAAAGCATTTAAACTCACAACCCCCGTCACTGATGGATAGGGATTACTCAGATGTAAATAAA
ATCAATAATCAACATTATCGTCGATACTGTGAAGTCAAGTGAATTTGTAAAGCTTCATTCATTG
CATAAGCTTCACAGATTAGGTTGTTTAAATAATAAAACATGTATATTAACAAGGCAATAAGGCT
ACTTGTATTTTCAACTCGAATGTTTTTTACATATATAGATGTGTGTGTACATGCATACATATAT
TTCTTTTATATATATACCTAAATTTAAACAAAAAAGCTAGTTGAAGCATCTATAAATGTTTCAT
GAGAGCCGAACTCTTGCATTAGTCTTTTATCCATAATTATTGCGACCAAGAAAGATACTCAAAG
CACATAATTTTCTACATAACACACTCACGCTGCATCTCATCAGATCGAGAACTCTTCTCAATTA
GAAGGCATTTTGCCAAAATGATTGCTTGCTGAATTGGCCTGAGATTAGGAATAGTGGAACCACC
ATTATGAATCCCATCTGCTTTAGTTCCTGACTCGTTATCATTATTTAACAACTTTGGCGCCATT
AGTATGTCAGAGGTCTCAAAAGTTTTGGATTGGGAAGGCAAATTATCCTTGTGCATCGTAGAAC
CATGCGCCTGGTGCCCAGGCTCCCTCTCTGATGAGTCTGCATTCGCAACAAGCACTAACTGTGC
CTTTGGTTCCACCTACAACAAAAGATTATCTTTAAGCTGAAAGTGACCAAAATCTTGAGGAAAC
TCTAACTGTTTTTTTTTTTAAGTTACTCACCTGATATGAAGTACGAAAACCAAGAACACCTGTA
ATAGAAAGCTCAAGACCAGATTCCACTTCAGCCGACTCAAAATGTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.094709429
Functional Information
Coding potential Y
Potential coding position 22081876-22078429(-)
22078961-22081939(-)
Potential amino acid sequence MHKDNLPSQSKTFETSDILMAPKLLNNDNESGTKADGIHNGGSTIPNLRPIQQAIILAKCLLIE
KSSRSDEMQRWDMAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYY
DCYPGVVQRMFFCCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIFCYRLLEKK
AAAVDLIKSRLSQMPNDPKLWCSLGDVTNSDACYEKALEVSNNRSARAKRSLARSAYNRGDYET
SKTLWQHFESAEVESGLELSITGVLGFRTSYQVEPKAQLVLVANADSSEREPGHQAHGSTMHKD
NLPSQSKTFETSDILMAPKLLNNDNESGTKADGIHNGGSTIPNLRPIQQAIILAKCLLIEKSSR
SDEMQRWDMAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYYDCYP
GVVQRMFFCCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIFCYRLLEKKAAAV
DLIKSRLSQMPNDPKLWCSLGDVTNSDACYEKALEVSNNRSARAKRSLARSAYNRGDYETSKTL
WQHFESAEVESGLELSITGVLGFRTSYQVEPKAQLVLVANADSSEREPGHQAHGSTMHKDNLPS
QSKTFETSDILMAPKLLNNDNESGTKADGIHNGGSTIPNLRPIQQAIILAKCLLIEKSSRSDEM
QRWDMAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYYDCYPGVVQ
RMFFCCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIFCYRLLEKKAAAVDLIK
SRLSQMPNDPKLWCSLGDVTNSDACYEKALEVSNNRSARAKRSLARSAYNRGDYETSKTLWQHF
ESAEVESGLELSITGVLGFRTSYQVEPKAQLVLVANADSSEREPGHQAHGSTMHKDNLPSQSKT
FETSDILMAPKLLNNDNESGTKADGIHNGGSTIPNLRPIQQAIILAKCLLIEKSSRSDEMQRWD
MAPYIEAIDTQQSSLFMVRFFCNILRVRWESSRSRTKERALVMMEKLVEGYYDCYPGVVQRMFF
CCGVYVPTFPALRKEYGELLVSCGLIGEAVKIFEELELWDNLIFCYRLLEKKAAAVDLIKSRLS
QMPNDPKLWCSLGDVTNSDACYEKALEVSNNRSARAKRSLARSAYNRGDYETSKTL
MIPNSGAHWVMLQIVMPAMRKPWKFQIIDQLELSDPLLVVHTTEGTMRPPKPCGNILSRLKWNL
VLSFLLQVFLVFVLHIRWNQRHS*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019