Detail information of Csa4G102290_circ_g.4


General Information
CircRNA Name Csa4G102290_circ_g.4
ID in PlantcircBase csa_circ_002449
Alias Chr4:6623427_6627822
Organism Cucumis sativus
Position chrChr4: 6623427-6627822  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2;Find_circ
Parent gene Csa4G102290
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa4G102290_circ_g.1 Csa4G102290_circ_g.2 Csa4G102290_circ_g.3 Csa4G102290_circ_g.5
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa4G102290.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTCCTGTGTCTGACGCTTCGTGAGCTTGTACCGAACAGAAGGCTCCGCGTCATTTATTGA
TATTTCCCTTGCTATTAACTCATCTTGAATCTTTGActtgaaacgccaaactctttactgattg
tatccatcaggtcttcagccaattttttggcatcttcaagatttttggaattgttgcttgtcaa
gaataaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAAACGCCAAACTCTTTACTGATTGTATCCATCAGGTCTTCAGCCAATTTTTTGGCATCTT
CAAGATTTTTGGAATTGTTGCTTGTCAAGAATAAATGCAATCGTTGTTCTGCAAAAATGGGAGA
TATTGTTCTAATTCCAAGTGGATGATAAAATAGCACTGCACATCCTCTCTTGTCAATTATAATG
TGGTAAGAGTCTTTTATAGTAAAAAAATACCTTCACATGCACCTTCAGTATTCCCCGCACCAAG
TCCTCGAAGAGAGACAGTTACTCCAGTTTCAGCCATTATGTGATTTATATACTGGTCCTGTACA
GAAAAACAAACCACCAAAAACAAAAAACAATCTCCCCCAGATGTTTGGAGATGGAAAGCTTAAA
ACATTAGCATCTCTCACCTTGAATATGTGAAACAAAAGTATAAACTTCAAAAGAACAATTAGCC
AAAAAGAGATCATGCATGACTCAGAATGACGAGTGACATTGCAAATGGCTATAATATATGATTA
CATTGTGCAAATAATAAAGCTGTAATGCTACAATTGCTTTCGAACTAGATAAAACCCATAAAAT
GGTGTGCGAGGAGAGAGTAACGTTTGATTTAAAACCTTTTTCTAATCAAGATTTGTGCTTCAGG
TGGGACATTAAGCTTTTTTGGGTAGAAGAGAACCACATTTAAATTTGCTTTAAAATTGGACATA
ACGACGACAACAAAAGCATAAGCATTTAAATTTTAACATCAATGATATGACATGATGTTTGCAT
CGTGTCTGTGTTCATACTTTTTAGCCCTGTCAAGAATCTATAGATTCCACAAGTTTATAAATTA
TAATGAGAACTATACCAAATGTTCCTACCATATTGTACATATTGTCCATACATGCATGCATGCA
TGCAAGCACACACACACACATATATTGTACTAATTCTACATGGTATTCCCAGTAAGAACTGAAG
TCATACAGTTACGAACATAATAAGCAGTTATTTCATCAATTAAATAAAGAACAATAGAGAAAGG
GGGAAAGCATAAGAGAATGTTGTACTGACTGTATGTTCTTAGTTATGAAGCAAAAGGATCCGAT
TTTTGAAACCAGTATAGTTCAATAGAGCTTCCTTAACATTTGGGAGGTCTTGGAATCAGTAATC
TAGGCATATAAATGAGGCTTCTCATAGCTAAATGGCTTTGGTGTTTTCTACATGAGAAAAATGC
TCTTTGGCACCAACTGATTGTGGCTTAACTGCTTAAGTATTATTTAATTTATTTTAGGGGTATT
GTGAGCTTATGCCCACTGCCATTTTGAGGAGATGTCAAAATCTTCTTGGGCATTTCTTAGCAAC
ATTATTGCTCTAATTGGAAATCGAATACCAAGTAGGATTGGAAATGGTCACAACAACGTGGTTT
GGCATAATTTTGGCTAAAGGTTGAAATTCTTCCTTTTTGAGGTAGCATGGCATTTGGGCCTATA
GAGGAACGAAACTCAATGAGATTGAAATTATGGAACGGAGTAACCTATCCAACCTTTTATATCT
TGAGGAATATGAATGCCTCTTGGTTTTGGCCTCTTTGATCCTTCCAAATTTTCACCATGAGTTC
TTTGATGGGGGACTTGATACACTCAAAAGGTTTAACTAAAAATAATCTTTACACTCGTTTGGAA
GAATTGAATGACACTTTTTTCTCTCCTTCATAGTGTGTTATTCATTCTTCTAATGCTACTGGGT
CATTAAATTACTTTTTACTCCTTCGATTAATGCTATCTTAACTTTATGTTGAAGGTTTTTGGCT
GACGTTTGGTTATGTCTTACAACATTAATGATCTCCTAGCCTCCAGCTTTGTGGGTCATCAGTT
TCATGGTCCCCAGAAGCTTCTATGGCTTGCTTTTAACAGAATGTCAATCTGAACTCTTCGGTGT
GAGAGAAATGGACAAATTTTCAGGGATACTTCCTCCACCATTTGATAGTTTTTATGGATTTGAT
TGTCTTTAATGCACTTTTTTATGTAAATTAAATTTAAATACCTATAGTAATTATAATCTTTTTC
CCTTAATTTCAAGTTCAAGATTTATATGAAATAGCATCTTGATCTGCCATATAGGCTGTAAGAC
TGTGTCCTTGAGTTCTACAATAAATAGCATGGAGGACCCAAAAGAAAACTTACATTTGGTCCCC
GTATTCGAGCAGCAATGTTCATAGATGGATCTGTGTCAAAGCCCAAGAACACACTCATGCTTAA
TGGCTGATTAACCTGATTAATTACGAAATGAATAATCAGCACTAAACCTCCACTGGTTGTTGCA
AATAGAACATGGCAGTACAGTAATTGTAATTATACCTTGAATTCATTGTTTAAAGGACTAAAGG
ACAATGTCGCCAAATTCTGACCCTGTCTAAGCATTTCTTCAACCATGGCAGCAGCTCGATCAAC
AGCTAAAATCCTTTCAGCCATATCTTTCAGCTGCAGAGTTAACGTTTATGTTTATTGTATTTAA
AGAAAAAACTGTACAGGGAAAAGTTACCAGGTCTCCAAGAATAGAAAAGATGGTAAAGCTGTGC
AAATCTAAAGAAAATACAATATCAGAGCACAAAAGAATGGAAGAACAACACTAAAATAACAGAG
AACCATCTGAATTGATTCACGATCCCCATGTTGGAATTTTGCAAGACTGAGGAAAAGAACAATA
GCAGAAGGCAGATTTTAAAATTTTGGATCTTCCCCATATTGGAATAGAGCATTGAGGCCTGTTT
CTAAAGGCTCAAGAAGTCTCTGCCTCTCAAGCTCGGATGACTCATCAATAAGCTCCAAATCCTC
GCTACTGACGCTGAAAGGAGAGTCGAAAGAGGACTCGCCCTTCTTTCTAGAAGGAAAAAGGAGA
GGTTTTGCTCGAAGATGGTATTTGTTGGATAAAGACTCTTTTTAGGCCTGCAATGCATTCTTGC
TGTGTAGAATGGGAGTTTGGCTTCTGTCTGCAATGTTGTCTAGGCTATTTCCCTTTATCGGTAC
CCTTTGAAAATGATATTGATATTCAGATTATGAATGTGTACGGTCATCTTCTTTGTTAAAGAGA
CCACTTCTCAAGATATTTGGAGGATATTTCAGTTTACATAATGGTTGCTGGTATCTCAAGGACA
ACTGTAGAAGGCAGGTATCATGAAGAAAAAAAACAAGTGGAGTTCAGCCTAAGAGTACAATAGG
AAGTGTTGCCTCGCAAAGGAAAAAACCCTGTCTAAACTTAAGTTCACCCAATGAAGAAACGATG
GCCATAACCTCCGCCATTTCCTTTTCTAACAAAGGTCAAGAAAAAACAAACAAAAAAGAGGCTG
AGCTCCCCAAATTCTTTAGAACATCAGCAACAAAACAATTTTTCATAGTGGAAAAATAATAAAA
GTTAGAAAATCTACAACGCAAGGGATGATCCCCTAAACATCTATGATCTATCCTCCAGAAATAA
GTACCATGCCCAACACCAACCACACATAAAATCCAATCAAGAAAATGGAAGCTCAGTAGAAATT
TTTTCACACTGATTTGTCATTGTATCTAACCCCACTCAAAATCCAATCAAAAGAATCGGTATCA
TACTTGCTCAGGACAATCCAAATCCATATGAAAAAAGACACAAGGGGGAAATGCCAAAACCACT
TTGCCAATAACTCCCTATTACAAGCCCTTTAAGTTCTGTAATTTCAACCCTCCTAGGTAAATGG
GTTTACCAATGTTCTCCCAGTGGTGAGGTCTTTTGCCTTCCTGGGCACATTAGTCCCTCACGAG
CAGCTTCTCCAAGCTCTTACACACCAGACATGGGGCTCTAAAGGGGAAAATGGGAATACCTTAT
ACTACTTGTCATGGTTTCTTAACAAGAGTCATGATAGGAGCTAGTAGAAATAGTTCATTTCATG
ATGCATGCCAGTGAATCAGTGAATCCTACTTACATGGGCTCCTGCAGAGATGTGAAGATAAAGT
GGCTTGTTACCATCTGAGGGCGTGTTTGGAGGATGATACTTGCCCCTGCAAGTGTTATCAAAGT
TTACTTCAAAAGAGTACATCATTAAAAAAAAAAAAATCCACCATAATTGACTTTAATTACTTTC
AGACCTAGTTATCACCACGGCACCAGTGTGTCTTTGAATCTGCATAGAAAGTGACATAGTAGGG
AAAACAATTTTACAAAAAAATCAAAAAATTAAAAATAAATGAAGAACAAGAAAGACTGGGTTAG
TTGAAGGAAACAATTCATATGAAACAAAAACTTATCAAACACTCAGACCAGGCGTACCCTAAAG
ATCACTCACCTCCTCCTGTGTCTGACGCTTCGTGAGCTTGTACCGAACAGAAGGCTCCGCGTCA
TTTATTGATATTTCCCTTGCTATTAACTCATCTTGAATCTTTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.093119307
Functional Information
Coding potential Y
Potential coding position 6625881-6627803(-)
Potential amino acid sequence MAERILAVDRAAAMVEEMLRQGQNLATLSFSPLNNEFKVNQPLSMSVFLGFDTDPSMNIAARIR
GPNDQYINHIMAETGVTVSLRGLGAGNTEGACEEQRLHLFLTSNNSKNLEDAKKLAEDLMDTIS
KEFGVSSQRFKMS*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019;He et al., 2020