Detail information of BGIOSGA015424_circ_igg.1


General Information
CircRNA Name BGIOSGA015424_circ_igg.1
ID in PlantcircBase osi_circ_014202
Alias Chr04:11814799_11819622(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 10057626-10062449  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015424_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGGAGATCGGCGCAGGGCGCGAGGAGCGGAGACGAGACGGCCAAAACGCAAGAGGGGACGGC
GGAGGGGCTTGAGAGAGATACTCACGCACAATGGTTccttttcacggatggttgccagcaaacc
atcgttccactgctcatcatctattgggatctctacaaaatgaaaaaacattgatgtagaaagt
ttaacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCACGGATGGTTGCCAGCAAACCATCGTTCCACTGCTCATCATCTATTGGGATCTCTAC
AAAATGAAAAAACATTGATGTAGAAAGTTTAACAAAAAAAGATGGTTTAAAGCAGGAGGATAAA
AAGATGGCATAAGAGGATAAACAATGGTTTGAAGCAGGAGGATAAAAGCTAATTAAAATGATGA
TACTAGTATGATAAGACTTAACTGTGTGCCATGATGGTTGTAAAAAGAAGTTTGAGAATATAAC
AGCATTTCCGGGATCCACAAGAAAAAAAATAAAATAAAAGACCTGTACACTAGCAATAACTAAA
GCTCATATATTTGATTTTTTGTTGTCTCGAGAAAATTGATAAATAAGGCATTAGTTTGCAAAGC
AGGTATACGGAGTGTGAAACTATCAAATGGGGAAAAAAAGCCCAACTAATGTAATCTTCAATCA
GAAGACGAGCATAAATATATCACCATGCTGTGTTATACTGTGCATATAGTTATGACTTGTAGTA
TTGGCCTATGAAAGCCATGTGACCAAACTAAACTATATATATATGGGGCCATTTGGTCTGTAAT
AGTGCTGTGCCATGCCAAAATTTTGTCACAACCAAAATAAGACATAACCAAAACTTTGTTAGCA
CATGTGATTGGATTGCAATCGTGAGACAATTTGATTTGAAGCCATCTAGACATCAAAATTCTCT
TTGGCTTGACTATAGTTCGAGGCCATATGATACCTAATGTTTTGCAATGTCCCAACGTAGCAAA
GGTTTATCTTGTCTCATAGATTTTGTCAGAAGGAACATGATGGTTTAAATGGGACACAAAGTTT
GACAACCAAACCAATAATGCATTAATTGCAACCAATCACTCAAATTACATGAGCATGCAGCAGC
AGCAGCAGCAGCCCTGGGAATTCCTAGGCAGAGCCGCTGAGGATTTGACCAACCAACAAAATAC
AAGAACTTGTGTCTAGAATCACTTGAACATTGCCGAGTTTTGAAGAGGTACCAGATTCTGGAAG
CAAACTTTAGTGGCCAAATGTTAAGGGCACTACAAATTTTGGAAGGACTAACATAGGTATAGAA
CCAAACAGGATTTATGCCCTCAAGAAAAATGAAGAAGATTTGTCGGTCGTGAATACCAGAAACA
TACCATCTTCTTCAGTTACATACTTACATTCAGAGCTACTCTACAAAGGTGCAGCACAGAGGAT
TGTCGAAGAAACCACATCAACATGTTGCATGTATTTTGTCCTAGTGATCAACCAAGAAATTTTA
TCCAATGTTCTTATAGACACAAAGAAAAAACTAAAATTTACTAGGTGACAACTGACAAGAGTAG
TAGTAGTTTAGTACAATGTAGTCCACCTTTTCAAAGACTACATAACTCAATATGGATGGTACAT
CCTTCCAAGATAGGTTGGAACTCGATATGGATGGTACATCTCAGAAGTTACTCCAAATAGTCTA
AGACTATTGAAATAAAAAGAGTAAAGTGCATAGGCGGTCCTTAAACTTGTAAGGTTGTGTCATC
TAGGTCCCCAAACTCTCAAAATGCACATCTAGGTTCCAGAACTTGTCAAAGTGTATCATTTAGG
TCCCAAATCGACATAGCCCCTATAGAATCCTATGTGGCGCTGATATGGCATGCCATATGGACGT
GATATGTCCTTTTCTTCTTTTTCCCTTCTTTTTTCTTCGTTTTCTTCTCATTCTTCTTTTTTTC
TTCTACTCGGGAAAAGAAAAAAAAAAGGAGAAGAAAGAAAAAAAAGAGGAGGAGGAAAAGATAA
GAAAAGAAAAGAAGAAAAAGATAAATGGGTTTCATTTGTTAGTCAAAATGATGCCACGTCTTGT
CCGTGTGGCATGCCACATCAGTGCCACGTAGGATCCTATAGGGGCTGGGGCGATTTGGGACCTA
AATGACACCCTATGACAAGTTCTTGGACTTGGATATATATTTTGAGAGTTTAGGGACCTAGATG
ACACACCCCTGCAAGTTTAAGGACCGCCCGTGCACTTTACTCAAATAAAAATATGACAACAAAA
GAATTATTGTGAACAGAAGCATTAACAGAATAATAATCTCACTCTCTCCTTCAATGCAAAATTC
GTAGCTAGGATTGCAAATAGCTAGCATTTCTTACCTTACAATTATATTTTATGTTCTGTATTAA
TGATTTTGAATTCAAAAAAATGTCACTAACAAAGCTCTTTAATTTTTCAGTAACCGCTCAATAG
TTTCAGTCATGCACATGCATGGATTCTTGTTAGTTCATGGTTTATACGGAATTCAAGGAGCAAC
CTAAACAGGTGACTCCTGTGTGCTCAAGAAAAAAAAAGAAAAAAAACTGAACAGTGACCACATT
AAATTCTATCTTATGAACATTTGTGTCCATATTTTTTTTAATTTAGTCCAAAATGCAGTTTCAT
AACTTGAGAGATGAAATTTAAAACACCATTTGGAATTTCAAAGTTCAAAATGCAAAGAAATCAG
AAATGGCTCGGCGAGCATTATTTTGCAAATTGAGCAGTCTTTGTGGAGGTTGATTTTGTACAAA
GTTGATCTTAACCAAGGAATATGCAGCAAAGAATACTAAAATATGCAAACTTAAAGGAAAAGGA
GATTGCACAAATATACAATTACATGGATATTGATAATCATTGGTAAGCTTATTTCTTCTAGTAG
AATCTCACAAAGATTCATGGTAATGTTAGCAAACTGTACCTTCAGTTTGGGCAGTTCGTGCAGC
CTCAAATCCTCTCTGTAGCCGCTCAAAAATCAGTTTATCAGAATCCCTGAAACAAAGTAAAAGC
TTAGCCCATGCATTCATATGTTTATCAGAATTCAGAAATATGACAGGAAGATAAAATCCATTCA
ATAGTAAGCCTAGTTATCAGGAACATAGCTGCAACAAATACGATTATAAGAAATCCTAAGTAAT
TCATATTTACATATTAGAGGAGCCATATTTGAGGGGAAGTATCCATCTCATAAGATATTTGTTT
TATGCAAGAGTTTGGTTTCAATTAGAATCTGTTCTTCAATAAAAAAAAATGGTCAATAAATTTG
CTGGCAGTTTGAATAGGGTATTAAATTATTTCCTTATGCACAGATGCAGATGTTACATGCTAAA
GAACATGCAAAGGGAGTACCGTGAGAGGCGCTCTTTCAAATCTTCATGCCTTTTGAGAACATTC
GACACTGCAAAACAGAAGTTCAAAATTATGCCTAAACTGCTTTCTTGGATTCCTTAATAACAGA
AAGCCCCCAAGAAAAGAATTGTTTCCAACTAAAGAAAGAGGGAACTATTACGCCTCGCCCGAGT
GGTCTCAAGTCTTGTATCTTCATCCCTTATGTAAGTCTGCAACAAATGAACAGAGTGGGGGTAA
GCAAACTAAGCACAAAGGAATGCATACCTATACAATGCAAGACTACACAGACCGTTAAAATAGG
AGAATCATAGCATACCATTTCTTGTACTGAATGTTGACACCTCCTTAATTGCTCAAAATGCTGC
AATTCAAAATTCAAAAAGCATTATGTTGACCAATTATTTTATATTTGGCTGTTGGGCCAAAGAT
GTGTCAACAACAAAACATGAACCAACCAAAGAGATCATTAAAGGGGATATCCTGTCCTTGAAAT
GTGATAACATCAGCAACAGAACATAGCATGATGCAATCGAAAAACAGAAGATGGGGATACATTC
ATCTCAGGAAAGCCCTTTGTTCATGGAATGAACATCGTGGGGGTGTTTAGATCCAGGGGTGTAA
AGTTTTGGCGTGTCACATCAGATATTATATAGGGTGTCACATGGGGCGTTTAGGCACTAATAAG
AAAATTAATTACAGAATCCGTCAGTAAACCGCAAGGCGAATTTATTAAGCCTAATTAATCCGTC
ATTGGCAAATGTTTACTGTAGCACCACATTGTCAAATCATGGAGCAATTAGGCTTAAAAGATTC
GTCTCGCAAATTAGTCGCAATCTGTGCAATTAGTTATTTTTTAGCCTATATTTAATATTTCATG
TAGGTGTTCAAATGTTCGATGTGACAGGGTGTAAAATTTTGGGGTGGGATCTAAACAGGCCGAA
AGATCAGTGGATCATTGATCAACATCTGAACTAAATATTTACAAGACAATGACATAGTATTGCA
ACACCATTATGAAAGTTATCACTTCTAGATGCTCAGATAGATCCAAGCAGTTGGATACCGCTCG
CTATACAGGAAACAGATGATCTATTGGCTATACCAAAAAGAGTGCGCCTCAGCAGTGTACCACC
GAAAGCATGGGGATTCACATTTAATAAATGCAGAGTTGAACAAACATGCTTAACAGTCAAGCCT
GTCATATAATAATTCTATAATTCTCGAACTGTTCTCCACAGCAGAAGTCCTACTGCATCCATCG
ATTAGTAATTCAGGGGCGGACATGGGGGTTACTTTTTTGGGGGGAAAAACAAACTGTTACTTGT
ATTAAGGTTAGGGCTCTCAAATTTAGAGAAAAGCTTCTTCCAGATCTAGAAGAGAAGAAGCTAG
GGTTCACGCAAGCAAAATCGAGACAAAAAGTGGGTGAGAGAGAGAGAGAGGGGGGGGTGAATGA
GAAAGAGGATGCGGATGCGGATGCTCACCGGGATGTGGCGGAAGCAGCAGCAGGGACAACGGCG
GCGTCCCCCTCTGCTCGCGAGATGGAGATCGCCGACCCTGATCTGCTCGCGGGATGGAGATCGG
CGCAGGGCGCGAGGAGCGGAGACGAGACGGCCAAAACGCAAGAGGGGACGGCGGAGGGGCTTGA
GAGAGATACTCACGCACAATGGTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021