Detail information of Zm00001d037354_circ_g.1


General Information
CircRNA Name Zm00001d037354_circ_g.1
ID in PlantcircBase zma_circ_005241
Alias ovule_test_circ_002840
Organism Zea mays
Position chr6: 122604774-122605899  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method find_circ
Parent gene Zm00001d037354
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues ovule
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d037354_T004:3
Zm00001d037354_T002:2
Zm00001d037354_T003:3
Zm00001d037354_T001:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAGTGGAAGGGCGCTTTGAGCATGTTGTGTTATCATGCAGTACCACTTCTGATCATGGCATT
TATTGGATTGAACGAGAATCACAAAAGGCTTTAGAGggacgactttttgccaagaacaccgact
ccgctagagtacatttttggttctatcttctggtaactagatcatgttcactgtctccagattc
ttatttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACGACTTTTTGCCAAGAACACCGACTCCGCTAGAGTACATTTTTGGTTCTATCTTCTGGTAA
CTAGATCATGTTCACTGTCTCCAGATTCTTATTTGTTCAGGAAAAAGAACAACTGCATGTATGA
TCGAGTTTTTCACCATGCCTTTATGCTTTGGAGTTTGGACAGCTTGCCCTGCATGCTATTTCTC
ATCTGCTTGAGAGATACATTTAAACAAGACAAGAGAAAATTTAAAGATCCAAGAAGACTGTATG
CACCTGGGCGAATGTATCATATCGTTGAGAGGAAATTTTGCAGGTAATGTATCATGTCATTGCA
AATAGCATCTTCCCCTGCTTGCGAATTGCTCTTTTCTTTTTTTATGTCATAAATAATATAAACA
AAAACCTACTCTTCTAGTATATGGGAGCTCCTGCCTATGGATTATAATCCATACTACAGTCTTT
TCATGATTTAAAGCAAAGATTTTTAGTCCTTGTATTTTTTCTAGCAGAAAGCAGCAAAGCTTCA
GTCTGCTCATGCATGAGAGTATGGAGGCTCCAATCATGTATTCTTCTATATTGTTTGAACAGAT
GAAGGCTACCTTCCTCAACTTCCTTACATTTCTTCTGGTCAATTAAAAGATAAAATGAATTACA
AATATTAAGAATAAGTTAGAGTTCAGGAGCCTAGTACAGATAGGTTGTTTCGAAATTGGCGAGT
TATCTCGAGATTATCGGATAATATATCTTTTTAGGGCCTATTATCATGGAATGTGATCCATGCC
AGTACCTAGGTTTGATGTATGTTGGTACAGCATGATGTGCATAATACATTTTTTTTTCGCGAGC
GGGTTGAGACCCGTATTTCATTAAGAGGGAAGGAGTTCTATTACAGCATGACCTGCATAATACA
ATGCTTAAGGTGTTTTATTTAACATTTTTTTTCACTGTTGTACACGAAAGTATGCTATGATATT
TTTAATGGATATAGTTCTACTCATCTGCAGATGTGGAAGATTCCCACCTGAGGTTAGAACTGCA
ATTCCAGTGGAAGGGCGCTTTGAGCATGTTGTGTTATCATGCAGTACCACTTCTGATCATGGCA
TTTATTGGATTGAACGAGAATCACAAAAGGCTTTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.195228086
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018