Detail information of BGIOSGA014906_circ_g.1


General Information
CircRNA Name BGIOSGA014906_circ_g.1
ID in PlantcircBase osi_circ_014455
Alias Chr04:24090823_24091935(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 21989233-21990345  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA014906
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014906_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA014906-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCGACAGGCCGTGCTTCTCGAACCCGCCTTCTCCCTCCAAGAGCTCCGGTGGCGGGAACGC
GTCGGCGAGGAAGTTCTGCATCGGCATCGTCATCAGgctgcgtagtgtgaggatgcgagattca
gaggcttgaaagaaaatgcaccagatccttcttcgatcggaggggattcaaatctgattggatt
gctgccgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCGTAGTGTGAGGATGCGAGATTCAGAGGCTTGAAAGAAAATGCACCAGATCCTTCTTCGA
TCGGAGGGGATTCAAATCTGATTGGATTGCTGCCGTTGGCACCACCAAGCATGTGCAGCTTCCC
AGTGGTCGGCGAGGCCTGGCCCTGCAAAATCCCATACACAGAAAGCATTTTGTCCGGTCAGGTT
AGTCCAAAGCTTCAGGGTTTGCATACTTTTGTGAACTTAATTTTAAAAGTATCACCAACGCATA
ACGTTGGGAAATGAGTTCAGTTGACCACCCTAAGACACTGCATTCTTAGAGTTCATTGATATAT
ATGAATAAGAACACGATTAACGCCTAATTTTAATTTAGGCTTAGGTACATATACATTGGGACAG
TGTTTAGCGCATAATGCTGGATTATTATGCATATGCATAATGCATCCACAGTGCAACTGTAGCG
GTTCATTTGTCTGAAAGAAAAAAAATAAGTATCTTTAAAAACAAAGCAGCAAGTATGATGGAGG
AAGTCTGAGCAGCAAGTACGAACTCCCGGAGAAGTCAAAAGTTCAGTAGAGTAAAGCAAACATT
CTTGCCTGCCAGCTTAACATTACATGGACACAAAAAGCAATCGAATCTAACACTAAAACTTACT
AACATTATATGCACACACAAACACAAGGTTCGGTGTGCTTATCAAGCTAGAAATCGTAACCACA
GACCAAGTGATGAATTGATGATGGATACCATGGCATTGGAGAAGAAGACCGGCGATTCCAGCAG
AGTCGTCGGGCTCAGGCCGGGCGGGATCGTCACGTACGGCGACGGCGCCCCCGCCGACGACACG
TCCGCCGCCGGCTGGTTGTACGGCACGCTGATCCTGGCGACGTTGCTGAACCCGCCTCTCGCCC
TCCTGTCGGCGAGGCTGCCGCCGCCGGAGCCGAACTTCTGGCCGAACTGCGGCGTCAGTGGCAG
CGGCGAGCACCCGTCCTCCGGAGGCGGCGGCGTCGGCGGCGGCGAGCCAACGGCCACCGACAGG
CCGTGCTTCTCGAACCCGCCTTCTCCCTCCAAGAGCTCCGGTGGCGGGAACGCGTCGGCGAGGA
AGTTCTGCATCGGCATCGTCATCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021