Detail information of BGIOSGA018991_circ_igg.2


General Information
CircRNA Name BGIOSGA018991_circ_igg.2
ID in PlantcircBase osi_circ_005886
Alias 5:53974|54510
Organism Oryza sativa ssp. indica
Position chr5: 53974-54510  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018991_circ_igg.1 BGIOSGA018994_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACGGAACATTTCAGCTTCATTGAAGTTCCTCTCAAGCCTGGGGTCGACCAACTCTTCCAAATT
ACCTGTCTCAATAGCTTGAGTAAGCAATGGTCTAGCctctactggcgactgctgctccaaccgt
attggctcatgtcggagctgtcatcgtggttgcccagcaccatccgctggaacatcctaacctc
tgctgtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTACTGGCGACTGCTGCTCCAACCGTATTGGCTCATGTCGGAGCTGTCATCGTGGTTGCCCA
GCACCATCCGCTGGAACATCCTAACCTCTGCTGTGTTCGCCACATTGAAAAGCTCGCTCTGCCC
TGGCTGAACGCCATTTGTAAGATCAATATCGGCTAAGCTATCAAGAGCTCGCACCACCTGAAAG
AAATCAAGATTTTAACTTGATAACTGCTTCTAGATAGACTGAAAACCACAACCGTAGTACCAAT
TGAAATGAAATGCACTATTCGTATGCGCAGATTGGAATGCAAAGCATTGTTCCCAGTTCATGTA
AAAAAATGAAATGTTTCCAGACAAATTCCAAACGTAGCTTGTATATTATATGCACCTGGCTCAT
TCTGGGCCTCCTTGATGCGGAGTATCGAACACAGGCTGCTGCAGCTTCAATCATACGGAACATT
TCAGCTTCATTGAAGTTCCTCTCAAGCCTGGGGTCGACCAACTCTTCCAAATTACCTGTCTCAA
TAGCTTGAGTAAGCAATGGTCTAGC
Conservation Information
Conserved circRNAs osa_circ_026133*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021