Detail information of AT3G10050_circ_g.1


General Information
CircRNA Name AT3G10050_circ_g.1
ID in PlantcircBase ath_circ_020757
Alias 3:3100689-3100958
Organism Arabidpsis thaliana
Position chr3: 3100689-3100958  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G10050
Parent gene annotation Threonine dehydratase
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G10050.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCCTCTTCTTCAGCTCGTATCTTAGCATGTGCTTGTGCTTGATCATACGAATCTCCGAAAAG
AACAACCGTTGCACCCAAATTCTCTACAGCTTGCCActcgggagaaaccctcttcacataagca
gcaataccagctattaaaccaccaccaccaactggcacaaatatagcatgcaatggacccttag
cctgacga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGGAGAAACCCTCTTCACATAAGCAGCAATACCAGCTATTAAACCACCACCACCAACTGGC
ACAAATATAGCATGCAATGGACCCTTAGCCTGACGAGTGATCTCCATCCCAACAGTCCCTTGTC
CAGCAATAACATCAGGGTGATCAAAAGGAGGTATAAACGTCAGACCCTCTTCTTCAGCTCGTAT
CTTAGCATGTGCTTGTGCTTGATCATACGAATCTCCGAAAAGAACAACCGTTGCACCCAAATTC
TCTACAGCTTGCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.524160463
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020