Detail information of BGIOSGA016470_circ_g.2


General Information
CircRNA Name BGIOSGA016470_circ_g.2
ID in PlantcircBase osi_circ_014405
Alias Chr04:22565062_22566713(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20233029-20234681  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016470
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016470_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016470-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAA
ATGGTGGTGGTTCGACACACTGGACATGCCATACAGgattgaatggagtgtcaaaggtgggcca
ctcaggaacattgattctgctcgtgtttcgattccatctaccttgaaatatgatgaatcaaggg
aatggtaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGAATGGAGTGTCAAAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCA
TCTACCTTGAAATATGATGAATCAAGGGAATGGTAAAAAACTAGCTTGCATAGTACATGCTTGT
ATTTTGCAGTTCAATGCGCATATGCAAAACTCTGCAAAAAAGCTTTACCCTTCCTTGAAAACCT
AAGTGAACTTTCATACTTGGTTTCAGCTATACGTTTCGAACTCCTCTCGAGGAAACAGAAAAAT
ACTGGAAAGGATGGTACGCTTTCAGTTTACTGGTGTTCTTTATGTTTCAATCGCTTCTGTTTAA
ATTCTGGTATTTCTGAACGCCTTTTTGTGATCATTACAATTTAAAAGCATGTTATTACTACTAC
TATATACTGTATAAAAGTATTTGGTCATATTTAATTACAAGTATCTAACTCTTCATTACCTACG
TAACAGTATTGATACTACTGTATTCTCTTATCCCTGTCATGTTTTGATTTAACAAAGATCTACT
TTTTTGGTTCCTACACAGTAATATTAATTCTATTGTATTATTCTCTTATCTTATATGTCTGGAA
GCTTGAGCTATCTTGAATTTATCGAATAAAACAGAGAATAGGGTCAATGAGTTGTTTCAGAAGT
GGTAACCACATAACAAAATAGCAGCAAACATGGGGTGAACTAGGCCAGATTTCAGTTTCAAATA
ACATCGTTTATTTTTAGGAATACTTGAGTTATTTGTTTATCTCCTTTTGGTTGATACTGAAATA
TGAAATGTTTCTGTTTTAGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAA
GGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGGTTTGTATTTATCTTTCTAGTGTAATGA
TGTTAACAATTTTCTCATTCATGATGATTGCCCTGTTGAACTCGGACCTCTATCATTATTAGCT
CAATGTAATTTGTATTTAATTGATTACAAAATTTTATGCTTCCTGTTAGCTGCAATGGCATGCT
ATATATCCTTGGGTTTTCTACGGCCAAGCAGTAGTGCATTTTAAGGAGTTTTAATTAATCTGCC
ATTAGGCTAAACTGCACTAGTGATCAGGCTATCAAAATTTTGTGGCAACCTATTTGTACTGCGA
AAAGCGAATTATATTATAAGTCTTTTGTTTCTGAGGAACATCTGGTTATGTTAAATCAATCAGC
TGGTATGTGTTGAAGTTGATGCCTCAAGATATATGTTCCTATGAAACACAGACCATTGCTTTAC
TTCCTCAACCTATGTATAGGTCCTTCCAAAACAGAACTGCACATAGATTACACTTCACAATCTA
TCCCACCTGTACAGGTATGCTATCAGATCAGGAAATGAGAAATGACTCGAGCACACAAAATGCT
ACTTCTATTTAAGCTATTTGTCTTATGAAAACTATTCGATTAATGCATATATTTTTCTTATCAC
CCATTCTTAGTGCTTTGATTTGTGAAAATTGCATCATTTTTTAACACTTCTATGAACCATTATG
GAGGACATATTGGTAATGCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAA
TGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAG
Conservation Information
Conserved circRNAs osa_circ_023959
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021