Detail information of AT2G17840_circ_g.4


General Information
CircRNA Name AT2G17840_circ_g.4
ID in PlantcircBase ath_circ_013651
Alias NA
Organism Arabidpsis thaliana
Position chr2: 7757180-7757323  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene AT2G17840
Parent gene annotation Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues siliques and seeds
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G17840.1:1
AT2G17840.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCAGTAAATGCTCTTGACCTTTAGAAGCAATTGTAAGTCCGTAGTTCAACATCTCGTTAGT
GTTTTTCCctgcttccttcgcttcctctgacacctcctgcacagagaaactactataatcctcc
aagatcttctcaagct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCCTTCGCTTCCTCTGACACCTCCTGCACAGAGAAACTACTATAATCCTCCAAGATCTT
CTCAAGCTCCACCAGTAAATGCTCTTGACCTTTAGAAGCAATTGTAAGTCCGTAGTTCAACATC
TCGTTAGTGTTTTTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.170716606
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015