Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G02610_circ_g.2 |
ID in PlantcircBase | ath_circ_000293 |
Alias | At_ciR892 |
Organism | Arabidpsis thaliana |
Position | chr1: 554472-554863 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full |
Parent gene | AT1G02610 |
Parent gene annotation |
RING/FYVE/PHD zinc finger-containing protein |
Parent gene strand | - |
Alternative splicing | AT1G02610_circ_g.1 AT1G02610_circ_g.3 |
Support reads | 7/4 |
Tissues | leaf/root, leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G02610.3:2 AT1G02610.1:2 AT1G02610.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.235420203 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
554598-554474(-) |
Potential amino acid sequence |
MRRENGRRRRNRRLVNREESDFQECNSGVDRGASCCRYLALIEYKPGYTTTSKPSRFIETAVTI RDNLHIMRRENGRRRRNRRLVNREESDFQECNSGVDRGASCCRYLALIEYKPGYTTTSKPSRFI ETAVTIRDNLHIMRRENGRRRRNRRLVNREESDFQECNSGVDRGASCCRYLALIEYKPGYTTTS KPSRFIETAVTIRDNLHIMRRENGRRRRNRRLVNREESDFQECNSGVDRGASCCRYLALI(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |