Detail information of BGIOSGA006053_circ_igg.1


General Information
CircRNA Name BGIOSGA006053_circ_igg.1
ID in PlantcircBase osi_circ_004093
Alias 2:25866714|25871344
Organism Oryza sativa ssp. indica
Position chr2: 25866714-25871344  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA006053_circ_g.2 BGIOSGA006053_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTCTATGTTCAGACACAATTTTGACCATGAATGCAACTTGTAACCATCTGTGGCCTAGTCAA
AATCCTGGGAAATCATCGAATAACTTCCACTCCATTttgtaagtgctgctaagccaacatcagt
aatctgccgattgtcaagattaactgacttcagtgaattcagtgcagatatcttcttcataccg
gtatcagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTAAGTGCTGCTAAGCCAACATCAGTAATCTGCCGATTGTCAAGATTAACTGACTTCAGTGA
ATTCAGTGCAGATATCTTCTTCATACCGGTATCAGTAACTAACGTAAACGAGAGATTGATGCTT
TCCAAATTCCGAAGGCCTGTAAAAGTTTAATAGCTTTCCAATCAAATGCTTCAAATGCCCGTGC
AACGACAACCAAATACAGATAATAACAAAAATAACTGCAGAGGATTTGTGATGTAGCAGGTTGT
GCCAGTTAAGCATTATAATCGGATTGAGAAAACTGTACAAAAATCGTTGCACAACTTGACAAGT
TTTCTAAGATGATCAGACATAACAAGGATACGATGAGAGCATGTATTAATCATTTCACTTTTCT
GAACATTCACTGGTTGCAAACATATTATTCAGTAACTGTTCACATGCTAGATACTACAAATCTA
CAATACATGCAGTAAAGAGATTAAGAAAATAAAATGATAAAAACAATCACAAGATGCACATAAA
ACTGTAGCATTAACACATTTATGTTTTGCCACTTGCCGAAAACACTTCATAAAAGTAATCTTGT
ACATTATTCATGCCAAAGATGCAGAATAAGTCCTATTATCCAGTGTTTTACAACATGAATGACA
TTGCATGGCACTTAACTGCTAAAAAGGGTTAGAGCTAGAAATATTATTGTTCATAAGTGAAAAC
AGACCAGATAGATGCTGGAGTCCACTGCTTCCAACTTCGGTGTCAGATAGCTCCAAACTTTTCA
AAAGCATAAGGCCTACACATAACATAAGGCATATATAGTCACAGTAAATAGATCACAAATGCAC
CAACGAGACAATGATAATAATTAATAATCAACAAACCAAGTAATGCTCTTAAACAACTGAATGT
ACAATACACAGAAAAGCAGTTATAACAGGTACAGGCTGACATAAATACTATAGACACAAGGAAC
AAAGTGCGGCTGACAACTGTATCGTACTATTGAAAATCACAAGTAACAAGAAAATTAAACTCTA
AGCTATTGGCTTCAACATGTTTTGGGAGCAAAATTGAAAAGGTAAGTTTTTTTTTTTTTGAAAG
GTGAAAAGGTAAGAGTGAGCAGATAATTCTAACAAATTATGTAAGAGTATTGAAAAATGAAAAT
GATTAAAAACTAGCTCACCTCTCAGATGTAATAAGCCTTCATCTCCAACCTTGCATGAGTCCAA
GTTTAGAGATTCCAAATTGATCAACTCTAGAAGCAGCAAATGTTACCAGTTAGGTACCCAATAT
TCCAATAATTTGGCATTGAAAGCTCAAACCACAATCAATTTGCCAATTTCAAAATTGCATGGTT
AATATTACGAACTTCTACCAGAAATGTCACTGTTTCATGATAAATATCACCAAGTTCATTTCTC
CATCCAAATATATTTTTAAAATCCTTACAGGAAATATTCACTAGTGCCTACTGGCTAACATAAT
GAAGCCAGATATATTGCTTAAACAACAGAGAAAAAATTGACTGCACCACTTATATTTCCTGCAT
AAACATCCATATTCTTAAATGTAAATAAAGTTCTAACAAGAACTTAGTCTTACCTTTCAGATGT
GCTAAACAATCATCTGTGATATTATTGAACCCCAAGTTTAAAACCTTCAATTTTTTAAGACCTG
CAAAGCAGAACTGTTGTAATGAATAGAAGAACAGATATGCAGGGAATAAACTTTTCGAGCTGGT
GTCAACCAGGTGGAAACATAATATTAGGTAATTCTGTCAACAATTATTTTCACTAGAGTTCACG
TCATCAGTTATTACAACTGCCAGTGTATAACAATGACAAAAGGTTCCATGGATAATTATATCTT
GAACATACAAAGCTCACAAAACATACTTCCAGCTTTTATGCAAACATCGTTCAATGCCCCCATA
TTTACTACTCACCTGAATTTACTTAAAACATGTATGTTGGCATTATTCCAGTTTGTCAGCAGTT
GGCATTACAATTACCTTGAAAGTTTTCACAGCCTTCACCGTATATGCCACACCGACTCAAATTC
AACACCACCAGAGAAGCCAATCCTACAAAAGGAAATGACACACAAGGTTGTGTTTTTATGGTGT
TCTCTAGATGCAATCAGGTGCTTTGAAAGAGGTGAACACTGCCACCAATTGTAGTATCCCAATA
CACTATTAAGAAAAGTTGCAAGACCTGATATAGCTTCCAAACAGGCAGCAGTCACTGGACAGCC
CTCCAAATTCAACTGTGTTAGCTTGGACAAGCCTAGAGAAAACAAATGACAAAATAGAAAACAT
GAGAAGCTTTAGATAAGGTCAGAGGTAAACAATTAAATGGAGATCATGAGTACACCCATAAAAC
GCAAAACAGAAGGATGACTCTTTCGTCTTTTGGTTGTTCAACCATTAAAAATGAAAGATCAATG
TCCTAATCAAGAATGATTAAAATTATGGGCCTGTTTACCTCTAAGATAAGAAACACCCAGATCA
GTGATTCTACAACAAGCCAATTGCAATTCTTTCAAATTTGTGAGATCTGCGCAAAAGAAAGGTG
CTTGTCAGCCTGGAAAGGATGAGATAAAGAGTGATATATATTCCTTATAGTTTAAAATAACAAT
AGCTCAATTTCTATAAAAAGTGGAGCTTAAAAAGCACCTTATACAGTTATACTATGTCAAGCAG
GAATATCAAAGGAAATAAATATGGGATCCCAATAAATATATGTGCTGTTGTTACCTGATAAGTA
TTTGATATCTGAATCTGCAATGTTGTTACAATATCTCATATTGAGTGACTCCAGATTCCTGAGG
CCTGTAAAAGGATAAATGCAGCCAATATACCAAACTATCAATTTCTAGGCAGTTGAAGTTGCAA
CCTGACAGGATTATGACATTCAGGTAGGGAGGGGAGGGGTGAAAGCCAAAAGGACTACAAAAAT
TCAATTTAGAATTCTACATACCCACAGTAGTAAGCATATAAAATGTGATGTTTAGGAGCTGAGG
TACCTTTTAAGTGAACAAGGCCACCATGAATCTTTAGGCATCGTTCGAGATCAAGATTTACCAA
ATTAACTAAATTAGCGAATGCTTCCATTGCTTCAGCAGTAATACCATCGCTGCTCTTGAAACTG
AGAGATGTCAGGTTTGAAAGACCTGGATATTTAAAAGGCATGAATATCTAGTTCAACAGGATAG
TTAACATGACAAACAGCCAAAACATTCAAGAACTATACAAGGAAGAAACTAATCTATCTAATAA
GCGATCAAGTGGGTTAAGTTTCTCAAATAAGGAGTTTAATTATATACTAACAATCTGTTCCAAA
ACCATCTCTGTTGTAATCATATAATCTTAAGGCACTGCTAAAAGATTTAAGCTCATGCTTAAAG
CTCTGCAAGATGACCCAAATTAGTCCTATAAGAGCACGTCTCAGTAAGTAGCATGTTACTGACC
TGACAAGATTCCTAGGCCATGCTCTGAGATCATATCACAGTAATTACATGCCAAGCTTTGCATG
TTTGGACAATCTCTAAGAAGATATAACCCACTATCAGTTATTTCAGAGCAAGAAATGTCAACTG
ATAACAATGAATGCCTTTGAGAAGCCACTACTTCCATCCAAGCATCATTCACTCCAGGATACTC
CCCCAAATCAATGTCCTGATTGTCAAACGTATGCAGTATTTGTTATCCCACGGAGAAAAACTCA
GCCTTATATAGACAATTATCAGATGACCTTCCCAATACAAAAGCTAATTATCAATTACGCATGC
TGAGAAAATTCGACTTCCAAATAAAGGAAGTGCAATTAAGAGCCTGCTCTTAAATAAATATATA
GTTTGATGAAACTGGTTCCATTTGTTACTTTCTTGCTAAAGTATACCAGCTCTTCTTTTCCTTT
TTTTGGTGAGGAATACCAGCTCATTGTTATTGTAACATCATTCTTTTCTTTCATTGTTATTGTA
ACATCATTCTTTTCTTGAAGTCTTGTAAGTACTCATATGTTACAAGACCAAATTATGTGTCATG
CCTGTAAGCATGAACAATCTTACCTGTAGTGCACAATCCCAAAAAGTTTCAAGCAATGTCTCCG
TGAGACGGTTCGACGCTACCAATTCATTAAAAATCTGCTGGCTGAGATCCCTCGGCAATACAGA
AAAACTAGAATACTTGTTAATATCCTGCAAGTACCAGGACGTTAAACAAAAGGCAAGTGAAAAT
GGCAGCATCCATTGGCGAAATCAAACACATTAGACACCAAAGTACCTCGCAGGCTTTGGCCACA
CAAAGCTCCATTAGAGATGGGCAACGACCAGGGCCCTTTCCCTGGCCCTTGCGGGAGACATCGG
AATTGCTGCGTGGCAGTGTAAGCAGCAGCCATTTCAAGCTGCTGGTCTTTGAGAACCTGGAAGA
TGTCTGGAAAGAGTCATCCTCGTGCACTAATTGGCTTCTCTTCCTTGAGCAGACAGCACCCATT
ATAAGTGTGGAAGTATTGAACAAAACACACTTCGTCTATGAACTCCAAAGAATCTCTATGTTCA
GACACAATTTTGACCATGAATGCAACTTGTAACCATCTGTGGCCTAGTCAAAATCCTGGGAAAT
CATCGAATAACTTCCACTCCATT
Conservation Information
Conserved circRNAs osa_circ_015489*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021