Plant Circular RNA Database

Detail information of BGIOSGA036344_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA036344_circ_g.1
					
						ID in PlantcircBase
						osi_circ_003396
					
						Alias
						12:9019704|9025553
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr12: 9019704-9025553  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA036344						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA036344-TA:6

General Information
CircRNA Name	BGIOSGA036344_circ_g.1
ID in PlantcircBase	osi_circ_003396
Alias	12:9019704\|9025553
Organism	Oryza sativa ssp. indica
Position	chr12: 9019704-9025553 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA036344
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA036344-TA:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CCGGATCCATATAAAAGTGTGCGACAATCCCTATTTTTTTCTCCCTAAGGGATTTTACAAGCTC
TGAAGTCTTGGATTCATTAGGAGACAAGAACATTGCctggaaatgtcgcatatgcaaaatgggc
tcacacccaacctctgcaaccaattttcccagaggagtcttagcattgaatcggctagcctgat
aggcaact

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CCGGATCCATATAAAAGTGTGCGACAATCCCTATTTTTTTCTCCCTAAGGGATTTTACAAGCTC TGAAGTCTTGGATTCATTAGGAGACAAGAACATTGCctggaaatgtcgcatatgcaaaatgggc tcacacccaacctctgcaaccaattttcccagaggagtcttagcattgaatcggctagcctgat aggcaact
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							9025552-9019706(-)
9019779-9025510(-)
						
					

						Potential amino acid sequence
						
							MFLSPNESKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMA
EAGCEYITVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRS
PPSLHVIYINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADL
FQRMAVMSDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMN
RQIPIGQIVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVD
KIKEQYCDAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQF
VLGTESGMITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDL
DNVSVVPGVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLG
KLVAEVGCEPILHMRHFQAMFLSPNESKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHW
PHIHISDSLVMADSAVKMAEAGCEYITVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSL
ADAASSSAYTHFLKEASRSPPSLHVIYINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIP
GLNVWYGPDSYMGANIADLFQRMAVMSDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLEN
PVLVLGLVGSHPSLFQLMNRQIPIGQIVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFS
TKLDGNCIVHDMFGHEVVDKIKEQYCDAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDF
IKNHLMEALDRNIDDHLQFVLGTESGMITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAV
SNTSVNGSHHLDSSTVTDLDNVSVVPGVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDR
DNRLVAYQASRFNAKTPLGKLVAEVGCEPILHMRHFQAMFLSPNESKTSELVKSLREKKIGIVA
HFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMAEAGCEYITVLGVDFMSENVRAILDQA
GYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRSPPSLHVIYINTSLETKAHAHELVPTI
TCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADLFQRMAVMSDEEIAEIHPSHNKKSINA
LLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMNRQIPIGQIVLHWNNKEQGQVVASHAL
IEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVDKIKEQYCDAFLTAHFEVPGEMFSLSM
EAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQFVLGTESGMITSIVAAVRELFDSYKTS
QQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDLDNVSVVPGVSSGEGCSIHGGCASCPY
MKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLGKLVAEVGCEPILHMRHFQAMFLSPNE
SKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMAEAGCEYI
TVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRSPPSLHVI
YINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADLFQRMAVM
SDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMNRQIPIGQ
IVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVDKIKEQYC
DAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQFVLGTESG
MITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDLDNVSVVP
GVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLGKLVAEVG
CEPILHMRHFQ(-)
MLRLLWENWLQRLGVSPFCICDISRQCSCLLMNPRLQSL*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	9025552-9019706(-) 9019779-9025510(-)
Potential amino acid sequence	MFLSPNESKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMA EAGCEYITVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRS PPSLHVIYINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADL FQRMAVMSDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMN RQIPIGQIVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVD KIKEQYCDAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQF VLGTESGMITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDL DNVSVVPGVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLG KLVAEVGCEPILHMRHFQAMFLSPNESKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHW PHIHISDSLVMADSAVKMAEAGCEYITVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSL ADAASSSAYTHFLKEASRSPPSLHVIYINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIP GLNVWYGPDSYMGANIADLFQRMAVMSDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLEN PVLVLGLVGSHPSLFQLMNRQIPIGQIVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFS TKLDGNCIVHDMFGHEVVDKIKEQYCDAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDF IKNHLMEALDRNIDDHLQFVLGTESGMITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAV SNTSVNGSHHLDSSTVTDLDNVSVVPGVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDR DNRLVAYQASRFNAKTPLGKLVAEVGCEPILHMRHFQAMFLSPNESKTSELVKSLREKKIGIVA HFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMAEAGCEYITVLGVDFMSENVRAILDQA GYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRSPPSLHVIYINTSLETKAHAHELVPTI TCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADLFQRMAVMSDEEIAEIHPSHNKKSINA LLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMNRQIPIGQIVLHWNNKEQGQVVASHAL IEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVDKIKEQYCDAFLTAHFEVPGEMFSLSM EAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQFVLGTESGMITSIVAAVRELFDSYKTS QQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDLDNVSVVPGVSSGEGCSIHGGCASCPY MKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLGKLVAEVGCEPILHMRHFQAMFLSPNE SKTSELVKSLREKKIGIVAHFYMDPEVQGILTASKKHWPHIHISDSLVMADSAVKMAEAGCEYI TVLGVDFMSENVRAILDQAGYSKVGVYRMSSDQIGCSLADAASSSAYTHFLKEASRSPPSLHVI YINTSLETKAHAHELVPTITCTSSNVVATILQAFAQIPGLNVWYGPDSYMGANIADLFQRMAVM SDEEIAEIHPSHNKKSINALLPRLHYYQPKNWTSKLENPVLVLGLVGSHPSLFQLMNRQIPIGQ IVLHWNNKEQGQVVASHALIEKNYCVRKGKIIVYFEFSTKLDGNCIVHDMFGHEVVDKIKEQYC DAFLTAHFEVPGEMFSLSMEAKTRGMGVVGSTQNILDFIKNHLMEALDRNIDDHLQFVLGTESG MITSIVAAVRELFDSYKTSQQSANIEVEIVFPVSSDAVSNTSVNGSHHLDSSTVTDLDNVSVVP GVSSGEGCSIHGGCASCPYMKMNSLRSLLKVCHQLPDRDNRLVAYQASRFNAKTPLGKLVAEVG CEPILHMRHFQ(-) MLRLLWENWLQRLGVSPFCICDISRQCSCLLMNPRLQSL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA036344_circ_g.1

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