Detail information of Zm00001d013318_circ_g.1


General Information
CircRNA Name Zm00001d013318_circ_g.1
ID in PlantcircBase zma_circ_001884
Alias circ869
Organism Zea mays
Position chr5: 8524740-8524875  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d013318
Parent gene annotation E3 ubiquitin-protein ligase HOS1
Parent gene strand +
Alternative splicing Zm00001d013318_circ_g.2 Zm00001d013318_circ_g.3 Zm00001d013318_circ_g.4 Zm00001d013318_circ_g.5
Support reads 8
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d013318_T032:1
Zm00001d013318_T001:1
Zm00001d013318_T033:1
Zm00001d013318_T023:1
Zm00001d013318_T019:1
Zm00001d013318_T037:1
Zm00001d013318_T010:1
Zm00001d013318_T029:1
Zm00001d013318_T003:1
Zm00001d013318_T025:1
Zm00001d013318_T036:1
Zm00001d013318_T028:1
Zm00001d013318_T002:1
Zm00001d013318_T030:1
Zm00001d013318_T015:1
Zm00001d013318_T011:1
Zm00001d013318_T017:1
Zm00001d013318_T024:1
Zm00001d013318_T021:1
Zm00001d013318_T016:1
Zm00001d013318_T007:1
Zm00001d013318_T035:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGGTGGTCATCAAGGACTGGTGCAAGAGGGCTGTTAATGTGCTCATTACTGAGATTGGTGTG
ATCTgatatcacagatgtttgtttggatgagaatgctgtgtcaagtgatccacttctggctttt
cttttgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATCACAGATGTTTGTTTGGATGAGAATGCTGTGTCAAGTGATCCACTTCTGGCTTTTCTTT
TGGATGAGGTGGTCATCAAGGACTGGTGCAAGAGGGCTGTTAATGTGCTCATTACTGAGATTGG
TGTGATCT
Conservation Information
Conserved circRNAs osa_circ_021748
PMCS 0.719366483
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b