Detail information of BGIOSGA027775_circ_g.1


General Information
CircRNA Name BGIOSGA027775_circ_g.1
ID in PlantcircBase osi_circ_007490
Alias 8:605587|606306
Organism Oryza sativa ssp. indica
Position chr8: 605587-606306  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA027775
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA027775-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACAACATGCAGGATACTCACCTCTTGAAGTTCCTTTTCCATATCAAGGTATTCAGAAATTCC
AGGATCATCGTTTTTCTCCTTGATAATCTTCCTAACctctgactgcagtccgcttgaataattt
ggcggtgatagacctacatcattctgggtgttcccactttgatttgcagttgccaaaagctctt
ctgttaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTGACTGCAGTCCGCTTGAATAATTTGGCGGTGATAGACCTACATCATTCTGGGTGTTCCCA
CTTTGATTTGCAGTTGCCAAAAGCTCTTCTGTTAATGTAATAACCTGCAGTTATTACAGAAAAT
CACATTAAGTACAACACAAGAACCAACCTCCCAATATCATTAAATCTGTCCATATTTAGCGATT
CAAACTTAGAGAAGCAGCATCAACACCCAAAATCGGAAGGAGGTACTCTACCATGAGACACAGA
CCTGCAATCAATCAAGATAAAGGGTAATGGACAACTTTGAAGCCATGGAATTTTAGATTTAGTG
GTCATTACTATTAACATGGTTGCTCAGATATTCCCTACCATTGACATATTCAACCTTTCTCACC
TTTCAAGGTTACAATAAAACCTAAATGCCCCACAAAAATGTTGCAAGCTGCCTTTTCATGCTAC
CTTGTTGGGCATGGCTCCTTGTAAGAAAGAAGAAAAAGGGATCGATAGCAATAGAATGAAGAGC
AAATATCCTTTTGTAGAAAATCATCAAGTCATATTAGCATTAGTGTACAAGATATGGCATCTGA
CAATTAGTTGATACCTAGCAACACAAAGTACACAGCAGCATAACATACAACATGCAGGATACTC
ACCTCTTGAAGTTCCTTTTCCATATCAAGGTATTCAGAAATTCCAGGATCATCGTTTTTCTCCT
TGATAATCTTCCTAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 606251-605589(-)
Potential amino acid sequence MEKELQEVITLTEELLATANQSGNTQNDVGLSPPNYSSGLQSEVRKIIKEKNDDPGISEYLDME
KELQEVITLTEELLATANQSGNTQNDVGLSPPNYSSGLQSEVRKIIKEKNDDPGISEYLDMEKE
LQEVITLTEELLATANQSGNTQNDVGLSPPNYSSGLQSEVRKIIKEKNDDPGISEYLDMEKELQ
EVITLTEELLATANQSGNTQNDVGLSPPNYSSGLQSE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021