Plant Circular RNA Database

Detail information of AT2G35738_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT2G35738_circ_g.1
					
						ID in PlantcircBase
						ath_circ_016689
					
						Alias
						2:15023592-15024958
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 15023592-15024958  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G35738						
					
						Parent gene annotation
						
							other RNA
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G35738.6:3
AT2G35738.7:3
AT2G35738.5:3
AT2G35738.4:3
AT2G35738.8:2
AT2G35738.3:3
AT2G35738.1:3
AT2G35738.2:3

General Information
CircRNA Name	AT2G35738_circ_g.1
ID in PlantcircBase	ath_circ_016689
Alias	2:15023592-15024958
Organism	Arabidpsis thaliana
Position	chr2: 15023592-15024958 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G35738
Parent gene annotation	other RNA
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	seedling
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G35738.6:3 AT2G35738.7:3 AT2G35738.5:3 AT2G35738.4:3 AT2G35738.8:2 AT2G35738.3:3 AT2G35738.1:3 AT2G35738.2:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AGGTACCCGAACTTGCTGGGGCATCCGTCTTTGAAGAAGGTTCTGCCTTTCGAGTGGCACAATG
CCTTCATATCAGCAGACTGAACAATGCATGCTCCAGattctcttgatcaattcatggctatcga
aactgattctgccataaaaatctggacaggtctctctcagttctaatttttattgctttgtttt
tgccattc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							ATTCTCTTGATCAATTCATGGCTATCGAAACTGATTCTGCCATAAAAATCTGGACAGGTCTCTC
TCAGTTCTAATTTTTATTGCTTTGTTTTTGCCATTCCATTTGATGAGATTGTGTGTGTGTTTGG
CGCTGTCAATTTCATCAAGCAATCCAATGTTGCTCATAGAATCCTTATTTTGTATTTGTGTTAC
CACTCTTATGGAGAAATCAAATTAAAGGTTAACACTTTATACTTTCTATCACTCCTAAATATCT
TATCAACTTTAACTCTTTTTTTTCTGATTCATATAGGCAAGCATGGAAGAAGATCCGTTGATCT
GTGTTGATGTCATCAAGATTCCACTGCTCTACTGTGCAACTCTTAAGCTGCAAAATATGCTAAC
TTGAAACCTCTTTGCTCTCAAAAGAGGTAAATTTGTCTCCTTTGTGTCACTAGGCTCTATCTCC
CTTGACCCTTGTGATAAATTGAACAAGCGGGTACTTAACGAGATAAAGTTAACATTATAGACAA
AGACAGCGACAACAGACAACTTGCTACGTTTTCTTTCTTCATTGCTAAAGCATTATCTCACTAT
TTTGCCTAGTTTTAGTATAAGCATCTTTGATTCTTGTTAAGAAAACATATCAACTTTTAGATTA
TAATTTTTACCAAAAAAAACTTTTAAATTATAATAATACAAAAAGGAGTTTGTTAGTGTTAGTA
TGGTATAGCTTTTGCAAGAATGATCTATGTATAAGTTGGGATATTTCAACTATATAATGTGGGG
GTATGTCTCTAATTAGATATCATTCTGTGTCTCTGCTGTAATGAGCAGAGTAAAAAGAATATGA
AGTGACAAACTAAGAAAAATTTGTATGTGTTATGTTGTTTTTTGGCTTTGCAGCCACAAGTACT
GCTAAGGCGTTTCCACTTGATTTTCCTTGGTCGTTGGCCGCAATAAACTAGGCCTAAACCCTCC
TTCTAGCAACTTTTCCACTTCCTCAAACTGAAGCCCTTTGGTCTCAGGCACAAGCAGCCAGATG
AAGAACAGCCCGACTGCGGATGACCCTGCAAATAGAAGGAATGTTCCCGATGACCCGACTGCGT
TTGTCAATGTCAGGAACGTCTCACTCACTACGAGATTTGACATCCAGTTTGAGACTGCAGCGAT
TCCTCCCGCGAGCCCTCTGTAGCGAAGAGGATAGATCTCTGAGTTGACAATCCATGGAACTGTG
CCCATACCGGGCGCGTACACAATGATGTAGAGGCCAAGGAAGACAATGGCCAGGTACCCGAACT
TGCTGGGGCATCCGTCTTTGAAGAAGGTTCTGCCTTTCGAGTGGCACAATGCCTTCATATCAGC
AGACTGAACAATGCATGCTCCAG

Sequences
Splice junction sequence	AGGTACCCGAACTTGCTGGGGCATCCGTCTTTGAAGAAGGTTCTGCCTTTCGAGTGGCACAATG CCTTCATATCAGCAGACTGAACAATGCATGCTCCAGattctcttgatcaattcatggctatcga aactgattctgccataaaaatctggacaggtctctctcagttctaatttttattgctttgtttt tgccattc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATTCTCTTGATCAATTCATGGCTATCGAAACTGATTCTGCCATAAAAATCTGGACAGGTCTCTC TCAGTTCTAATTTTTATTGCTTTGTTTTTGCCATTCCATTTGATGAGATTGTGTGTGTGTTTGG CGCTGTCAATTTCATCAAGCAATCCAATGTTGCTCATAGAATCCTTATTTTGTATTTGTGTTAC CACTCTTATGGAGAAATCAAATTAAAGGTTAACACTTTATACTTTCTATCACTCCTAAATATCT TATCAACTTTAACTCTTTTTTTTCTGATTCATATAGGCAAGCATGGAAGAAGATCCGTTGATCT GTGTTGATGTCATCAAGATTCCACTGCTCTACTGTGCAACTCTTAAGCTGCAAAATATGCTAAC TTGAAACCTCTTTGCTCTCAAAAGAGGTAAATTTGTCTCCTTTGTGTCACTAGGCTCTATCTCC CTTGACCCTTGTGATAAATTGAACAAGCGGGTACTTAACGAGATAAAGTTAACATTATAGACAA AGACAGCGACAACAGACAACTTGCTACGTTTTCTTTCTTCATTGCTAAAGCATTATCTCACTAT TTTGCCTAGTTTTAGTATAAGCATCTTTGATTCTTGTTAAGAAAACATATCAACTTTTAGATTA TAATTTTTACCAAAAAAAACTTTTAAATTATAATAATACAAAAAGGAGTTTGTTAGTGTTAGTA TGGTATAGCTTTTGCAAGAATGATCTATGTATAAGTTGGGATATTTCAACTATATAATGTGGGG GTATGTCTCTAATTAGATATCATTCTGTGTCTCTGCTGTAATGAGCAGAGTAAAAAGAATATGA AGTGACAAACTAAGAAAAATTTGTATGTGTTATGTTGTTTTTTGGCTTTGCAGCCACAAGTACT GCTAAGGCGTTTCCACTTGATTTTCCTTGGTCGTTGGCCGCAATAAACTAGGCCTAAACCCTCC TTCTAGCAACTTTTCCACTTCCTCAAACTGAAGCCCTTTGGTCTCAGGCACAAGCAGCCAGATG AAGAACAGCCCGACTGCGGATGACCCTGCAAATAGAAGGAATGTTCCCGATGACCCGACTGCGT TTGTCAATGTCAGGAACGTCTCACTCACTACGAGATTTGACATCCAGTTTGAGACTGCAGCGAT TCCTCCCGCGAGCCCTCTGTAGCGAAGAGGATAGATCTCTGAGTTGACAATCCATGGAACTGTG CCCATACCGGGCGCGTACACAATGATGTAGAGGCCAAGGAAGACAATGGCCAGGTACCCGAACT TGCTGGGGCATCCGTCTTTGAAGAAGGTTCTGCCTTTCGAGTGGCACAATGCCTTCATATCAGC AGACTGAACAATGCATGCTCCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.12340553

Conservation Information
Conserved circRNAs	NA
PMCS	0.12340553

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G35738_circ_g.1

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