Detail information of Os03g0198300_circ_g.2


General Information
CircRNA Name Os03g0198300_circ_g.2
ID in PlantcircBase osa_circ_018380
Alias NA
Organism Oryza sativa
Position chr3: 5163154-5163328  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0198300
Parent gene annotation Heat shock protein DnaJ, N-terminal domain containing protein. (
Os03t0198300-01);Heat shock protein DnaJ, N-terminal domain cont
aining protein. (Os03t0198300-02)
Parent gene strand +
Alternative splicing Os03g0198300_circ_g.1 Os03g0198300_circ_g.3 Os03g0198300_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAACATATTTTTTTGGGTCATTTGCAGTCGTTAAGGAAAGAAGAGTGGATAGATCTCTTTGTTT
TTCAATCAGATTATTTTACTGTCgtgtccttttgtttagagttctgtgcacatccacatgtcat
tatcgaaacatattgttggtagcgttgacatcaaagctatctgttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCCTTTTGTTTAGAGTTCTGTGCACATCCACATGTCATTATCGAAACATATTGTTGGTAGC
GTTGACATCAAAGCTATCTGTTGTAAACATATTTTTTTGGGTCATTTGCAGTCGTTAAGGAAAG
AAGAGTGGATAGATCTCTTTGTTTTTCAATCAGATTATTTTACTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.133333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017