Plant Circular RNA Database

Detail information of AT5G13710_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G13710_circ_g.1
					
						ID in PlantcircBase
						ath_circ_038093
					
						Alias
						5:4424052-4426892
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 4424052-4426892  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G13710						
					
						Parent gene annotation
						
							Cycloartenol-C-24-methyltransferase
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G13710_circ_g.2 AT5G13710_circ_g.3 AT5G13710_circ_g.4 AT5G13710_circ_g.5 AT5G13710_circ_g.6 AT5G13710_circ_g.7 AT5G13710_circ_g.8 AT5G13710_circ_g.9 AT5G13710_circ_g.10 AT5G13710_circ_g.11 AT5G13710_circ_g.12 						
					
						Support reads
						1/1
					
						Tissues
						seedling;root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G13710.1:13
AT5G13710.2:13

General Information
CircRNA Name	AT5G13710_circ_g.1
ID in PlantcircBase	ath_circ_038093
Alias	5:4424052-4426892
Organism	Arabidpsis thaliana
Position	chr5: 4424052-4426892 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G13710
Parent gene annotation	Cycloartenol-C-24-methyltransferase
Parent gene strand	-
Alternative splicing	AT5G13710_circ_g.2 AT5G13710_circ_g.3 AT5G13710_circ_g.4 AT5G13710_circ_g.5 AT5G13710_circ_g.6 AT5G13710_circ_g.7 AT5G13710_circ_g.8 AT5G13710_circ_g.9 AT5G13710_circ_g.10 AT5G13710_circ_g.11 AT5G13710_circ_g.12
Support reads	1/1
Tissues	seedling;root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G13710.1:13 AT5G13710.2:13

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAATTACTTTTCGACGGCGGTGAGAACATCGGATTTATCGATCTTCCCACCAAGATTCGACG
CGAGATCCATAGCACTTATGCAACAACGGACGAGATtctggcttccgggccaagaagaaataca
ttggcgtgaaaatctctctcctgagaaacatttatccaagaagagatttagaattctaccccaa
aaaagata

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TCTGGCTTCCGGGCCAAGAAGAAATACATTGGCGTGAAAATCTCTCTCCTGAGAAACATTTATC
CAAGAAGAGATTTAGAATTCTACCCCAAAAAAGATAAATCTAAAGTGAATCTTGATGGTCTGAA
TAAATAAAAGTTGGGATCCTCTCACCTTCCACCGTCGACTAATCCTTCCGCAGCCTGCTCCAGG
AAATTTGAGACCCTTTGGCTTCCTTGAGGTGCAAGTCTTATGTATTCAAGGATCTTGACCTACC
ACATAAATAACAATGACAAGTTCGGATAAATGAACTACTAATAGTTTATGGGATTTGGCAGATT
AGTTAGAGCAAGTTTTTTACCATGTTTTTGGTTATGAATCGTCCAACAGCTGTAAGGCGGAAGC
TACTGAGTGAGAAATGATTTTTGTCAAGAGGTAAGTACCATGGGACCGGCGAGTCCTTGGCCAG
ATCCTTTTCCCATATCACCTTCATCCAACGCAGAGGATAATAGTATTTAGATGTTGAAATGTTG
ATGTGTTTGGAAATACAGAGGATCCATAAAATCAGATACTTACTTCAAAACCGGCCTGCTTCAG
AGCTTCGAGGCATTTTGTAGTCAGCCTAATGTCAGGAAGACCATCTCCAATCTCTATCTCTCCC
TGAAAAATGGAGTCTTTGTTTGTATTCATGTTGATAATAAAAGCACAAATAAATAATATGGATA
GATGCAAGGGACACACTAACCTTTATTTTCTGATGTTCGGCGTTATCAGGGTCAAATGCATCAG
TCATACACCACTCATAGGCAGCAAAACATTGCCCAGGCTTTAGCACTCTGTAGATCTCTTTGTA
GCATCCATACTGTTGTTGAGATCATAATGATGAATCATATAATAGAAGGAAGAAAACAACACAA
CTAGCTGTTTATAATTTTACGTACCGCATCAGGTGCATGGCAAGTTGCTTCTATTGCATAAACT
GCATCGAAACTGTTTTCCGGGAATGGCATCTTCATGAAGTCAGCCTGCAAGATTAACAAGTGAC
AGCAACCTTCATCATGTTGTCCTTTGCAAGGTGTTTTCTTATTCAAAACATGATTTATAGCTTA
TGCAATAATTACAAGAACTATGTACTCAACTGACCTTGACAAAGTTACATGTCTTGTCGACACC
TGCAAGTCGGTTTAGTTCCTGCAAAGAGAAAGATGCCAATATGAATTATAATGGACATAGCAGG
AATGCATCATCTTTCACAAATGTAGATACGTTACCTTGCCTCTGGTGATCTGGTATTCGTTATT
GTTGAGCCCGGTAACAACTGAATTGCTGCAACAGAGCAAACACAAACACACTTCATAATTGAAC
AACTATGTTCCTAACCATAAAATCTATTTCAAAACTCATGTATAGTAGAAGCACATGATGAAAA
GAGTGTGTGTGCGCTTTTGGTATGTGTAGTCATTTTACCTGAATCTTGCAATTTCCCTCAACGG
TCCACCAATTCCACATCCTACATCCAGTACCTACTCAGAAACATAATGGCAATGAGCATCTGAT
GGCGATGGCGAAGGGTCCATTTTCAAGTGTTCGGTTAAGGTTTAACAAACCTTTTGTCCTGGTT
GGATGCCAAGCTGAAGAGCAAGAAAGTGCTCGTGTCGCTTAATACTCTCTCGAAGCGATTCTCC
TTTCCATCTACAAACCCAAAATTCATGTCAATCAATACATATATAACTATAGTATCAGTAGCAT
CTATGGCTGTAAGAAAGAAAGTATATTGAAAGTCAAGAATTACCTTTGTGCAAAATGGAAGGAT
TCTCCCCATCCGTACTCATAAAAGCTAGTAGCAAGGTCATAGTACTTATTAACCTGAAAATTTA
ATCAGGAAATACTCATTCCAACAGGCAATGATTTGTTAAAGAAATTCAATACCTAGCCTAGTGA
AGTAGTACTTTAACTATTTTAAATATGATCTCCTGGAACAATATAGGCTTTTTTAGTTGTCGCA
TATTCTCAAAGTCAGGAGACACAACTACAAGGAACAGGCGTGTCTCAAGGTGGTGAAAATTTTA
TAAAATGTAAAAAAAAAAAAAAAAAAAACATTTTTGAATTTACCATGTCAGTATAATTGGCTTT
TCTCTCTTCCTCGTTTCCTCCATGGAAGACATGATATTGCTCATACCTGAATCACCAAATCACT
AAAAATTAATAATGTCCAGGACAAAAAAAAAAGTCCACCAAATAACATTTTTTTTTTTTTTTTA
ATTCATAGAACTCTGAAAAACTTTGGCCAAAAAAAACAAACCAATTGTTCTATATAGATAGATA
GATGAAGTCAATGACAATAAGATTGGTGGTCGGGCCCTCAAGAACGTGACAGTAGTGAAATACA
CGTCAAATGGATCTTTTATAGAGCCAAAAACGAAACTAGGGACCATCTCTCACTCATCATTTTT
CTTTTTTCTGCTGTATTGAAAGCTCAGTTCCATGAAGCATTAAAAACCAAAACAAACATAAAAA
CAGAGGCGAAATCCAATGCCATCATGGTATTCGTGGAATTGGTAAAAAGCGTAAACGTATGGAA
ATAGTAGGCTCAAAATATACGTTGATTCCAAAAATATGGAGATGCTACACAAAACAACAATCAA
ATCTTAATCTTAGGAGTTGATTATAGATAAAAACCAACGAGATCAATATGCATGAGACGAAAAA
AGCGAATTGTAAGTGAATCGGAGATGGAAACTACGATCAAAGAAGAAGGGAGAAGAAATTACTT
TTCGACGGCGGTGAGAACATCGGATTTATCGATCTTCCCACCAAGATTCGACGCGAGATCCATA
GCACTTATGCAACAACGGACGAGAT
						
					

			
		

Sequences
Splice junction sequence	AGAAATTACTTTTCGACGGCGGTGAGAACATCGGATTTATCGATCTTCCCACCAAGATTCGACG CGAGATCCATAGCACTTATGCAACAACGGACGAGATtctggcttccgggccaagaagaaataca ttggcgtgaaaatctctctcctgagaaacatttatccaagaagagatttagaattctaccccaa aaaagata
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TCTGGCTTCCGGGCCAAGAAGAAATACATTGGCGTGAAAATCTCTCTCCTGAGAAACATTTATC CAAGAAGAGATTTAGAATTCTACCCCAAAAAAGATAAATCTAAAGTGAATCTTGATGGTCTGAA TAAATAAAAGTTGGGATCCTCTCACCTTCCACCGTCGACTAATCCTTCCGCAGCCTGCTCCAGG AAATTTGAGACCCTTTGGCTTCCTTGAGGTGCAAGTCTTATGTATTCAAGGATCTTGACCTACC ACATAAATAACAATGACAAGTTCGGATAAATGAACTACTAATAGTTTATGGGATTTGGCAGATT AGTTAGAGCAAGTTTTTTACCATGTTTTTGGTTATGAATCGTCCAACAGCTGTAAGGCGGAAGC TACTGAGTGAGAAATGATTTTTGTCAAGAGGTAAGTACCATGGGACCGGCGAGTCCTTGGCCAG ATCCTTTTCCCATATCACCTTCATCCAACGCAGAGGATAATAGTATTTAGATGTTGAAATGTTG ATGTGTTTGGAAATACAGAGGATCCATAAAATCAGATACTTACTTCAAAACCGGCCTGCTTCAG AGCTTCGAGGCATTTTGTAGTCAGCCTAATGTCAGGAAGACCATCTCCAATCTCTATCTCTCCC TGAAAAATGGAGTCTTTGTTTGTATTCATGTTGATAATAAAAGCACAAATAAATAATATGGATA GATGCAAGGGACACACTAACCTTTATTTTCTGATGTTCGGCGTTATCAGGGTCAAATGCATCAG TCATACACCACTCATAGGCAGCAAAACATTGCCCAGGCTTTAGCACTCTGTAGATCTCTTTGTA GCATCCATACTGTTGTTGAGATCATAATGATGAATCATATAATAGAAGGAAGAAAACAACACAA CTAGCTGTTTATAATTTTACGTACCGCATCAGGTGCATGGCAAGTTGCTTCTATTGCATAAACT GCATCGAAACTGTTTTCCGGGAATGGCATCTTCATGAAGTCAGCCTGCAAGATTAACAAGTGAC AGCAACCTTCATCATGTTGTCCTTTGCAAGGTGTTTTCTTATTCAAAACATGATTTATAGCTTA TGCAATAATTACAAGAACTATGTACTCAACTGACCTTGACAAAGTTACATGTCTTGTCGACACC TGCAAGTCGGTTTAGTTCCTGCAAAGAGAAAGATGCCAATATGAATTATAATGGACATAGCAGG AATGCATCATCTTTCACAAATGTAGATACGTTACCTTGCCTCTGGTGATCTGGTATTCGTTATT GTTGAGCCCGGTAACAACTGAATTGCTGCAACAGAGCAAACACAAACACACTTCATAATTGAAC AACTATGTTCCTAACCATAAAATCTATTTCAAAACTCATGTATAGTAGAAGCACATGATGAAAA GAGTGTGTGTGCGCTTTTGGTATGTGTAGTCATTTTACCTGAATCTTGCAATTTCCCTCAACGG TCCACCAATTCCACATCCTACATCCAGTACCTACTCAGAAACATAATGGCAATGAGCATCTGAT GGCGATGGCGAAGGGTCCATTTTCAAGTGTTCGGTTAAGGTTTAACAAACCTTTTGTCCTGGTT GGATGCCAAGCTGAAGAGCAAGAAAGTGCTCGTGTCGCTTAATACTCTCTCGAAGCGATTCTCC TTTCCATCTACAAACCCAAAATTCATGTCAATCAATACATATATAACTATAGTATCAGTAGCAT CTATGGCTGTAAGAAAGAAAGTATATTGAAAGTCAAGAATTACCTTTGTGCAAAATGGAAGGAT TCTCCCCATCCGTACTCATAAAAGCTAGTAGCAAGGTCATAGTACTTATTAACCTGAAAATTTA ATCAGGAAATACTCATTCCAACAGGCAATGATTTGTTAAAGAAATTCAATACCTAGCCTAGTGA AGTAGTACTTTAACTATTTTAAATATGATCTCCTGGAACAATATAGGCTTTTTTAGTTGTCGCA TATTCTCAAAGTCAGGAGACACAACTACAAGGAACAGGCGTGTCTCAAGGTGGTGAAAATTTTA TAAAATGTAAAAAAAAAAAAAAAAAAAACATTTTTGAATTTACCATGTCAGTATAATTGGCTTT TCTCTCTTCCTCGTTTCCTCCATGGAAGACATGATATTGCTCATACCTGAATCACCAAATCACT AAAAATTAATAATGTCCAGGACAAAAAAAAAAGTCCACCAAATAACATTTTTTTTTTTTTTTTA ATTCATAGAACTCTGAAAAACTTTGGCCAAAAAAAACAAACCAATTGTTCTATATAGATAGATA GATGAAGTCAATGACAATAAGATTGGTGGTCGGGCCCTCAAGAACGTGACAGTAGTGAAATACA CGTCAAATGGATCTTTTATAGAGCCAAAAACGAAACTAGGGACCATCTCTCACTCATCATTTTT CTTTTTTCTGCTGTATTGAAAGCTCAGTTCCATGAAGCATTAAAAACCAAAACAAACATAAAAA CAGAGGCGAAATCCAATGCCATCATGGTATTCGTGGAATTGGTAAAAAGCGTAAACGTATGGAA ATAGTAGGCTCAAAATATACGTTGATTCCAAAAATATGGAGATGCTACACAAAACAACAATCAA ATCTTAATCTTAGGAGTTGATTATAGATAAAAACCAACGAGATCAATATGCATGAGACGAAAAA AGCGAATTGTAAGTGAATCGGAGATGGAAACTACGATCAAAGAAGAAGGGAGAAGAAATTACTT TTCGACGGCGGTGAGAACATCGGATTTATCGATCTTCCCACCAAGATTCGACGCGAGATCCATA GCACTTATGCAACAACGGACGAGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.130636933

Conservation Information
Conserved circRNAs	NA
PMCS	0.130636933

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G13710_circ_g.1

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