Detail information of Os03g0249300_circ_g.1


General Information
CircRNA Name Os03g0249300_circ_g.1
ID in PlantcircBase osa_circ_018869
Alias NA
Organism Oryza sativa
Position chr3: 7882499-7883036  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0249300
Parent gene annotation Nucleotide-sensitive chloride conductance regulator family prote
in. (Os03t0249300-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GG-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACAAAGTAACCTCACGAATAAATAACAGATGTATAGCCCAAATCAGTTTCAGTTATGTTAGCA
GAACTGAACCTGCTTGTCATTTTCTGCGTAAGTTTTgtatccttataaacatctctgtcacatt
caaataatgttgtttcccacaattttagctctgatgccttctttcttgagtttatatacgccag
ctgattta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 538
Transcript exons: 7882499-7883036
GTATCCTTATAAACATCTCTGTCACATTCAAATAATGTTGTTTCCCACAATTTTAGCTCTGATG
CCTTCTTTCTTGAGTTTATATACGCCAGCTGATTTATTTTTTCAAGTATTATTAGTGTAATACT
TCAAAACCATCTTCTGGAGACTCTTCTTACTCCTATTTGCTTTCCACTACCACCACAATTATTT
CATCATTTTATCCCTATTTATATGGTTTTTAAGTAATAACCTGTTCAGGGAACCAATTGGAGTT
CATTATCTTTCTGATGTGTGAATTGTGATACATGTGTTTTCGCAGTCATGCTTGAGGCGTTTAA
TTGGAGATTATCAACTAAATTTCCATGGTTTATTCTTATGAAATTCTAGAAAAAAACTTTAGGA
TCAAGACATAATTTTACTTGCTAGCAGTTTGTTTCTATTTTATGAAAATGTTAGTACAAAGTAA
CCTCACGAATAAATAACAGATGTATAGCCCAAATCAGTTTCAGTTATGTTAGCAGAACTGAACC
TGCTTGTCATTTTCTGCGTAAGTTTT

Genomic sequence GTATCCTTATAAACATCTCTGTCACATTCAAATAATGTTGTTTCCCACAATTTTAGCTCTGATG
CCTTCTTTCTTGAGTTTATATACGCCAGCTGATTTATTTTTTCAAGTATTATTAGTGTAATACT
TCAAAACCATCTTCTGGAGACTCTTCTTACTCCTATTTGCTTTCCACTACCACCACAATTATTT
CATCATTTTATCCCTATTTATATGGTTTTTAAGTAATAACCTGTTCAGGGAACCAATTGGAGTT
CATTATCTTTCTGATGTGTGAATTGTGATACATGTGTTTTCGCAGTCATGCTTGAGGCGTTTAA
TTGGAGATTATCAACTAAATTTCCATGGTTTATTCTTATGAAATTCTAGAAAAAAACTTTAGGA
TCAAGACATAATTTTACTTGCTAGCAGTTTGTTTCTATTTTATGAAAATGTTAGTACAAAGTAA
CCTCACGAATAAATAACAGATGTATAGCCCAAATCAGTTTCAGTTATGTTAGCAGAACTGAACC
TGCTTGTCATTTTCTGCGTAAGTTTT
Conservation Information
Conserved circRNAs osi_circ_014132
PMCS 0.223382667
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017