Detail information of Os09g0468700_circ_ig.2


General Information
CircRNA Name Os09g0468700_circ_ig.2
ID in PlantcircBase osa_circ_039514
Alias Os09circ06987/Os_ciR2103
Organism Oryza sativa
Position chr9: 17828664-17832968  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os09g0468700_circ_ig.1
Support reads 4/8
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGAGGAAAGTGGAAGAGCTGATATGAGGTACCTTGATCTGGTGAATCCTTCCTAAATCTGCAGG
AGAAGCCACAGCATTACTTTTTAGTTCATGTATATCcttcttgcgaggattctgtttcccttgt
gaagcaccaattactgccaaaataccaaagattccccatcttgtggccacacagcttgcccgtt
actttcct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 175
Transcript exons: 17828664-17828778,17832909-17832968
CTTCTTGCGAGGATTCTGTTTCCCTTGTGAAGCACCAATTACTGCCAAAATACCAAAGATTCCC
CATCTTGTGGCCACACAGCTTGCCCGTTACTTTCCTGAACGTTCATTCTGCGTGAATCCTTCCT
AAATCTGCAGGAGAAGCCACAGCATTACTTTTTAGTTCATGTATATC

Genomic sequence CTTCTTGCGAGGATTCTGTTTCCCTTGTGAAGCACCAATTACTGCCAAAATACCAAAGATTCCC
CATCTTGTGGCCACACAGCTTGCCCGTTACTTTCCTGAACGTTCATTCTGCTCCTCCATCCTGT
GATCAACCAAGTGAAGTTCATGCAAATAGCCAAAAAGCCCTCTCTAAAAATAGTTCTTCGGTTT
ATTCTGCTGTGTATACCGAAATTCTAAATATTACGAGAAGTTCAGATACCATGTAAAGGAATAG
AAGCCCAACAAAAGAAAATGCTCAATCAGGCCTTTAGTTGGGCACTTGAAAGTGATGGGTTTAA
AAAGTTTCAGTGTACCATAATCAGTTCGTTACAATAAACAAGATAGAAGCCTTTAAAGGAAAGC
ACAAACATGAACATCAAATCAGCAAAGCAAAGCAAAACGATACCAAGAAAACGATAAGAAAGAA
ATGAAAATAGGACGCAAGCTGTGTCCTCTCATTGACCCAAGAAAAGATTCTACAACAGGGTCCT
TTACCTGATTGACCTTTTACCGTTTCTATCTAAGCATGATTGATCAAATAGTGAAAGAGCTGCA
CAGCCATTTCACCTATGTGATGCTTGCACCCTGATTGATTCGACCGACAGGACAAAACACATGT
GCCACTTGCTCTCATGCTGCATGTCGTTTTCGCTCTTCAAATGTTCTGCTCCATCGAAGCATCA
TCTGGTAAAATAAAGAAGTGGAGCCACCTGAGAGAAAAGAAAAGGATAAACAGCAACGTCAGTG
TGGAGTTAACTTCATGCACCAACCAATCACCCCAAAGTTCACCAACCAACCGTTCGCCCAAAAG
GTCAAGTTGCTAGGGAAAGATGTGCAACTCTACTAGTATCACACAAGTAAAATGAAGAAAAAAA
GATGGGCAACTCGATGTGTGCGTATAAATGTATCTGTGCACGCATGTGAGTGGCCATGAAAATG
ACAGATCCGTAAAACAAGGAAGCAAACCAAAGAACACAAGATATACTGGTAGGATCATCGAGTT
GGACCATGACAGATAAACTTATGCACCTTATGCCTAGACGTATGCATAATGCATATTTGCATAG
ATGGAAGGATCGCATCTCATACATTGATTCAATAGAATGCAACTACTTTTTGCAGTATAGGGAC
ACCAAAAAGGATAAAAAAAACATGGCTCAAAATCTGCAAAACAGGCTGTAGACCGAAACAAGAT
AGTTGTTACTTAAGTAGAATAACCATAGCTTATTATAATAGTCTCTGTGACAACCAATCTCCAC
AGCAGACATAGCATAGATCACAAATCTTTATAAAGACCTACTCCTGAGGGTCTATAGGTTAGAG
GCGACTTATCTTCCTATTCCAGGACTCCATAAGAATAATGACAGAAAAACCTTTATGCTCCAAG
TTGAACACTTGAACCTTGAAACAAGCAAAAGCACGGTGTCAGGAAATTTATAATCCTCTGTGAA
TTGAATAATAGACTATAAAGTAATATACTTCAGACAGAATTTCCTAACTGACTCCATTCAGATG
AACCTGATTCATAATAAAGTGGTCCCATCAAACTAACCACGCATGAGATGAAAATGTTAGTGCT
TCATCTTAATAAGAAAAACCTTCGGACAGACACCTACATGCATGCTAATCACAACTACAGGGAA
ATGCAAAAATGTAATTATTTAGTAGTACAAAATTATCAGGCTAAGACTTCTAAGCAGACAACTA
CATTGAATTCTAAACAAGATTGATACTAACCGTAGTTGTTGAAGATATGTAAGTAGAACCATAC
CGCTTGACTAAAAGTTATATGTAACAATAACCAAGAAATTGTAGAGTCTTCCCACACCTATTAG
CATGTCATACACAACAAATAAAAACTCTAAGGTTTTAACTGTACAATTAATTTTTGTGAATAAA
TTTATTCTGAAATGAATTGTTTGATGGAAGCAGTGCCCAAATAGCACACAAAGATACACCTTAA
GAACAGGTTTAGTTGGCTAGAGAGAGAGAGAGAGAGAAACATCTGTGTATTAAATGGAACGGAA
AGCATAAATATTTTAGGGGGAAAAGGAGTGCTGTTCAAGTTTCAAACAGTGGAAGTCTGTCATA
CATATTGAAATATATCAGAATAGAAAAGCGAGAAAGCTAATATAACAATGCATGTCGAAACAAA
TGAATCATGCCAACCTAAATGGGTGCATATGTTACACTATAAAAGTACACTTTTCCTGCTCATC
AACCAAAGTAGTCAGTGGACAACTGGAAAACAGCAGCGCAACCCCATCATGTAGCACAGAAACA
AAAAAAAAAAAGACAGCTTAACAGATGCATAATTTTTGTTTGCTTGCATTTTTAATAAATAACC
CCATTTGAACAAAGGGTTGGGAACAGGAAGAGATGAAACAATGATTGACAAAGAAGACGTAAAG
GTTGCAACAAAGTCAAGCATAACTGCATCAGTGGATTTTTCAGTGGTTGCAAAGGTAGCTAAAA
GAAGAACCAGCAGCAGCAACTTTGATGAAGCACGAGCGAAAAAAAAAATTTGGTTGGTGTGATA
TTTTATCAAATAAGACAATTTTATCTATGCATTAGCTCCCAAACAAAAAATGGTCTACTATGCA
GTCTGCACATCTATCAATGAAGAAATTTGGAGGTACATGAGAGCTGAATTATAGCTGTAAAATG
TTTGTTGCATAAGCTTCAACATATTAACAATCCAAGTTCCTTCCAGACATGTCCATTCCTTAAT
CTGAGATCTCACCCAAGCATGTTAAAGGGGCAGTAGGTAGACCATCAAGTAAACTAACACAGGA
AATTCAAAACACAAGTACAATCAATATAAAGATATTTTTGTTCATCTATCAGAATAGCGAAGTA
AGTGGTAAAAAACAATTAGTCTTTTAGATGTTTGATAGAAAGAATTTAACATGGTTGCTCAAGT
CACATTTATATGTGCTGCAGTGCTTAAAAGTGAACTAAAGGTATGATTGTAGAAGGTAGTTATA
TATTCTTAAATTCATTATAATCCAGAAATATATGGATTCTTAACAGAATTCCTTGACAGTTGGG
CATATTGATATTTACCAGAATTTGGAAGGTGGAATAGAGCTTTAAGAGAAGACACATCAGAATG
TTGATATAGTGATCCCATATCTTTTCAAAATAAAAAAGAGACATTCATTGCATAAAAAAATAAC
AGGGGAAAAATATTTGTTCAACTTCTTTAAGCATGAATTGACAAACTTGATCCTCACTGAACAG
GAGAGGAATGCCGAGACAAAGAACAGAGATATTGCACAGAAACACACAACTTCACTAACATGGA
GAAGCTGCAACAGAGAGTAAATATAAATGTGTGATTTTTACTTTTACTAAATCATCTTAAAGCC
TGCAAAGTTATAAAATGAATAGTTTTAGCGATTTCTACTAATGTAATTTGTTGAGACAAAAAAA
AGAGCATAGATGGTTGCAATGCTGGAAAAAAAAACAATTCCTTTTTCTAATTAAACACAACGTC
AAGTTAATTTATAACTGTCAAGTTGAATGTCTTTCTTTGAGATAAATACGATTTAATAAGAGTA
AATTTAAATCAGTGTTTTAACCAAATATCGCATAAGACATTTAATGACATAGCCACAGCCGGTC
AGCTACTAAACAAAGGCCAAGAGAAACTGAAAAAAAAAATGGCAACTGAGTGATACTTACTGCA
TCTAAATGCAGAAGTTTTGCAAAACTCTGAATCCTATGCTAAAGGCTAAACTGCACATGGAGAA
GCAGGAGAGGAGACAATTTGAAAGTTATAGCCCTTTTCCAACCTGACTTACTCACAAAAATGGT
TAGCTGATATGCTAGTTCTCCACAACCACTCTTTGCAGTTTGGCCTCCCCTAAGGCTGTCATTT
GCTTTGTCTCTAATCCCACTTTTGTACAGATTTTTGGTAAAGCAATTACTGTAATTCAGTGTCT
CATACACCAGCATTCAGGCTATACTCTGAATCAGTAACTTAGAGGTTTTCTTAATAGGAACTTC
TTGACAGGCTGACTATTATGGAAACAGAGGTACAACAAATAAAAGGATAGGAGTCTGATTACAA
AAACAGAATAGATCAGAGCCTTCAAGTGCAATTTGTCTAATTTGAAATGTAATGGAACTTCTTG
AAATGCACCTTGCTTTGGGCTCCAAAACTGATACTTATAAAGAAGCGAGGAAAGTGGAAGAGCT
GATATGAGGTACCTTGATCTGGTGAATCCTTCCTAAATCTGCAGGAGAAGCCACAGCATTACTT
TTTAGTTCATGTATATC
Conservation Information
Conserved circRNAs osi_circ_018552
PMCS 0.522899491
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015