circRNA
Detailed infomation of each circRNA
Detail information of AT2G34460_circ_g.2
| General Information | |
|---|---|
| CircRNA Name | AT2G34460_circ_g.2 |
| ID in PlantcircBase | ath_circ_016434 |
| Alias | At_ciR665, Ath_circ_FC1488, AT2G34460_C2 |
| Organism | Arabidpsis thaliana |
| Position | chr2: 14530097-14530489 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, CIRI-full, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ, CIRI2 |
| Parent gene | AT2G34460 |
| Parent gene annotation |
Uncharacterized protein At2g34460, chloroplastic |
| Parent gene strand | + |
| Alternative splicing | AT2G34460_circ_g.3 |
| Support reads | 17/50/20 |
| Tissues | leaf/whole_plant/seedlings |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | AT2G34460.1:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.719092263 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
14530316-14530486(+) |
| Potential amino acid sequence |
MGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEVRADVT EGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVN GAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEVRA DVTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSI LVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPE VRADVTEGPDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLV SSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVM EPE(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | response to drought stress |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |
