Detail information of BGIOSGA005647_circ_g.2


General Information
CircRNA Name BGIOSGA005647_circ_g.2
ID in PlantcircBase osi_circ_012271
Alias Chr02:32323855_32324089(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 33011001-33011235  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA005647
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA005647_circ_g.1 BGIOSGA005647_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA005647-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACTCTTTTCAGTTGGTCCTGCTGGAGATGCCGCCCTGAAAGAATCACCGGCTTGCTCACCAA
CATCCAGCACAGGGGGAGTGCTGTCTGGTTGTTCTGggttcacgtgcagggcttggtgacgcat
cagccatttggctcggtgacgcatctgctccaccagattgtggtacagggctttggtctgattc
catggtac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCACGTGCAGGGCTTGGTGACGCATCAGCCATTTGGCTCGGTGACGCATCTGCTCCACCAG
ATTGTGGTACAGGGCTTTGGTCTGATTCCATGGTACCATCACCTTCTCCAGTTTCTTCTGGCAT
GTCAACATCACTCTTTTCAGTTGGTCCTGCTGGAGATGCCGCCCTGAAAGAATCACCGGCTTGC
TCACCAACATCCAGCACAGGGGGAGTGCTGTCTGGTTGTTCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021