Detail information of Zm00001d021295_circ_g.2


General Information
CircRNA Name Zm00001d021295_circ_g.2
ID in PlantcircBase zma_circ_009399
Alias zma_circ_0002585
Organism Zea mays
Position chr7: 148141077-148145777  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d021295
Parent gene annotation DNA photolyases;DNA photolyases
Parent gene strand +
Alternative splicing Zm00001d021295_circ_g.1 Zm00001d021295_circ_g.3
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d021295_T007:13
Zm00001d021295_T005:13
Zm00001d021295_T002:13
Zm00001d021295_T003:13
Zm00001d021295_T006:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACATGATGAAGTTCCAGATGAAGTAAATACCATACTATGTAAATGGGTGGAGCAGATTGAA
GTTAAGCCAGCCCTGGAGAAGACCAAGGCAATATAGgctattcagataaaatgctggaactgct
gctatttgctctgaaagatcttaagatgacgttgaaatctcaagattctgatttgctcataggc
ctgggaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTATTCAGATAAAATGCTGGAACTGCTGCTATTTGCTCTGAAAGATCTTAAGATGACGTTGAA
ATCTCAAGATTCTGATTTGCTCATAGGCCTGGGAAACGCTGAAGATGTTGTGCTGAAGCTTGTG
AATGAGGTCACTATGCAAGGTTTATATTGATCATTGAGCTTAAGAGTTTACATGTAAGTTCACA
TCTGACTATCTAACATAAGTATCTTCTGCTTGCAATGTTGCATGCACTGGTGGAGCGTAACAGG
TACAAGCAGGTCTCGTTTTTACAGAAGAAGAAGTTGAATATAGAGTGCGTGATGTTCTTGCCAA
TGTTGAATCATCTTTATCTAATGGGTCATTCTCATGGGGAAGCCCTCCCAAGATAGTGGCTTGG
AGTGCCCCATTGTATGACTATAAGGTAATTTAATTACGACCTCTCTTTTTATCCTTAGTAACTT
AAATATGTATGACATGCTGATAGCTGAAGTATTCATTATACTAGAATCTGGGAGCAGTACCGAC
ATCACATGACGATTTTTTAAAGAAAAAATTACCATTGGCCACACCTCTTGCTGCGGCGACCTTG
CCTGCTCTAAATTTGGAGTTAGACACAGGTGCATTTTAATTCTATTCTTTCTGGATTGTATGTT
ATTCAGTCAAATGTACCAGTGGTCACCAAACTTGTTCTAGGCTGTCATCTTGGTCCCCGAACTA
TTAATTTTCAGTTCCATGTCTATGAGCTTCCTATGCCCCAGTTTGTTTGAGCTTTTGTAGCTTT
GGCTTCTCAGAAGCCAGAAGCTGAAACAAGTAGCCTGCTTCTGAGAAGTTTCTTGAGAAGCCAC
AAGCCTGCAAAACTGACTTTATACTACTATAAAATCAGATAAGCCCAGAAGCAGGTCTGGATGA
GCTTTTCTAAGAAACCTGCTTTTGGAAAAGCTCCACCCGCAGAAACTCAAACAGACATGCAAGT
GATTCTCCAGATGTCGGGAACCCGTGGTAAATCTTTTGTTGCTGGATGTTACCAAGGCATTTTA
TATTAACGTGGACGCTAAGTCGCTAACAAGCCGTGAACTGTAGAGAGGCCACAAGGAAGAAGAT
AATGCGAAGGGATGTCAAATAAGCTGGGTTTGAACCTTGGATGTTAGCAAGTTCAGGGATGTGA
AACTGCAAATTAATAGTTCCAGGACTTACATGCATCTCTGGACAAGCTCAAAGATGCTGATGTA
TTTCACTCTGTTATTTTACCCATTTGTTTGGGCATTTTTATGTTCCCATTTAGCTTAACAATTT
CTTATTCAGGTTCTCTACCCACTCTGGAAGAATTAAAATGTTTCCTGAAAGAAATAACACCAGA
GGACAATTGGGCTCCTCTCAAGAGAATGCCCGCAAGATCTATCCTTAAAAGGACAATCAGTCAA
AGGAAGATCAAAAGTAATGCTACATTAAGCACCATCAATGAAGAAAACATAGATGATGCTGCCA
CCATGGATTCTGTTGCATCAGGAAAGAGGATTATAAACTCGAAGTTTGCATCAGAGAACTCACT
GGAAGTTAGTGGTGGAACAGAAATTACTTTGGATGCTTTGGCTGCTTACCTAAAATATCTTGAA
GGCACAGGAAATGCTAGTTGGCAAGAGTATGTGTTACCAACTAATTTTGTCCTTCAATTAAATT
CTCGCTAGGGACTTGGTCTTTCATTTTATTCATGTAACAGAGTCGTTATTAATGTATTATATGA
ATTCACTTGTCATATCTATTAATTCTTAGCGAGTCTTCATATTTAACCCGATTTAACTCTATCC
AGGTTGCATGATAAAGTGCGTTTAGCTGAAACCAGATATGGTGCTTCATTCTACATCTTGTTTG
GTCCTGCAATTCAACTTGGAGTCATATCTAGGAGGAAAGCTTACACTGAGACTATCCAATATGA
AAAAGATCGCAATGCAGGTTTTCTATCACCATTTGGGTACTCAACACCTACAGTAACATCAGCA
GTAGATGCTATATGTTCAATGGAGGTATTTTATTTTATTACTTTTCTATCTTGTTCTCAATATC
ATACCTTTTCTTCCTCTAGTGGGCTCATTTGTTATGCAAACCAAGCATCACTTTCTTTTGCCTC
TAACAATCTATATGTTTACATGATAGTGGTATTGGCTCTTGGCATCAAAATCCCAAGTATGCAT
CGAGGGGAAATATTCTATAAGAATTTGGAGATGGAAGGGTTATCTTGTACAGGTTTTCTTCTTA
CTTTCTGAACTTAGCATTTAAACTTATCTATAATCACAGCATTATTTGTGCCAGTTAGTGCAAA
TTCCTTATTTCATTGTTTCAACCATTCATTACTGTATACTTGTGGACATTTGTCTATATATGTA
GGCAAGTTTATTTATGCTGCTTACCACAAATTTCTCATTTCAACCCCCTGCTGCAGTACACCTT
TCTTGGCAACGAAGGTCCACCTGTTCTTCTTGTGCATGGTTTTGGAGCTTTCCTGGAGCATTTT
CGTGACAATATAGACAAGATTGCTGCTACGGGCCACCGAGTTTGGGCAATTACTCTTGTTGGCT
TTGGGAAATCAGAGAAACCAAATGTCAACTATTCAGAACTTTTCTGGTCTGAACTACTGAGGGA
TTTTATTGTTGAAATTGTGAGGGAGCCTGTTCATCTTCTTGGCAACTCTATTGGAGGTACATGA
ATTATATTTTAAAATTTCTATACAGATGATGGAACTTACATTTTTTGCACATCGCCACATTAAT
GAAGTTATACACAATCTTGATGAAGTAATTCTCTTCCGCAAATGTTCTCAGGTTATCTCTGTGC
TATTGCTGCTGGTTTATGGCCTTCTCTTGCAAAGTCTCTGGTTCTTTTAAACTCAGCTGGTTCA
GTTGTTCCAAATTACTCCTTCATCCCACTGAGTGAAGTAAGCAACCAATCTTCTGTATCCTATT
TTTAATTATGCTTTCTTATTTAAACCTTTTACTGAAAGCTAGGCATACCACGGTTTTATTACAA
AACTAAAAATCAATGGTTTATCATAGTAATTTCCTGAGTAATAGGTTTATGCATGTGTCTGTCT
CATACATTTTCTTGGTTCTGTTGACTACAAATGAGATTGATTACTTCATCTCAAAAAACTTGGT
GTTTTAGTTTTATCCTAAGTCAAACTATATTGAGTTTGATCAAGTTTATGAAGAAAATTGGTAA
ACATCAAATAGGCACGCTATGAAAATATGTCCCATAATGAATCTAATGTTATTTATTTCTGAAA
TAAATATTAATATTTTTTATATAAAGTTATAAACTTGATCAAACTTGACTTAGGACAAAACTGA
AACGTCAATTTTTTTGGGACGGAGGTAGCATCTGTGTTGATGCACATCAACCTTACATTGCTGT
TGAAACTGTTCTTATATCAATTTGCAGAACTAATAGTTTTATGCATGTGGCTGTTCCGTACATT
TCCATGTTCCTGTTGGCTACAAATCATATTGAAAATTTGTGCCCTACAAATTGAATTGTTGGTT
AGTAATATTAATTACCCCTGTTGATGTGCTTCTATGGAGTGCATCAACCTTACATAGCTCCGTG
GAAATCCTTACTCTGAATATTTTGCTTGATATGGGAATTGCAAGATCATTTGTAACACTGAAGT
GTGATATCTAGGTGAGGCTTATATTTTCATAGTCAAGATACATTAATATTGTGCTTTCATTAAA
AGAACACTTCTCAGGAATGGGCATTGGAAATAGTAGAAAACGCAAAATCTCCAGCATTGAACTA
TTGTCTCCAAAATATATTGTTGCTGCAAATTAAATTAAGCGCTAGTAAATCCAAATATCTGCAG
GAAAGACGAACATCATGGATTTCCAGGTTGCAGGCACAGCTCCTTTTGCTCTTCTTGAGGTCAA
GGGCAGAAGGCATTCTTAAAGAATATTATCCTACAGTATGTATATTAGGAAGCCATTTTTGTAT
TTTTCTTTCGATTCAATAGTTCCTTCCATCCATATATAACACTTATTACTTGTTTAGAGAACTG
AACGGGTGGACAAGCCACTTCTGGACCAGATTGTAAGAGCTGTATCCTTGTATTATCCAGTATA
TTTGGCATACTTTTAACTGCAACATAGTCTGCAGAAGGTTTCCTTGACAAATAAATTCAGTCAT
ATGATCCTGGTGCTGCAAAAGTCCTTGAGAGTGTATTCAACTTCAATCTTTCAATTCCTCTTAA
CTTCTTATTTGATTCTTTTGGAGGGAAGATATTAGTTATCCAGGTATGTACGTAATACCATCAA
CAAGCCTCACTCATCAAATAAAAAGTCATACACTCGCATATCTACTACACTTGCCAAATCTGGT
GCTTGCTGATGTGTGGGAGTGTAATCTTGTTTATTTGCTTTATTTGAACAAAGGGTATGAAAGA
CCCCCTTACAAAATCTGAGGCATTTGTCACCATGCTCCGAGAACATTGCAGCAAGGTTCAAATC
AGAGAGTTAAATGCAGGTGCGCTGCTCCTCTTTTCTCTGGACGCCAACCAATCTTAATTTTTTT
TTTTACTTTTTTCCTTATAAAGAATTATGTGGCTCATGATATTATAACAGGTCATGCTCCACAT
GATGAAGTTCCAGATGAAGTAAATACCATACTATGTAAATGGGTGGAGCAGATTGAAGTTAAGC
CAGCCCTGGAGAAGACCAAGGCAATATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109685531
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b