Detail information of Os06g0102100_circ_g.2


General Information
CircRNA Name Os06g0102100_circ_g.2
ID in PlantcircBase osa_circ_042220
Alias NA
Organism Oryza sativa
Position chr6: 163399-163552  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0102100
Parent gene annotation Cytochrome P450 93G2 protein (CYP93G2), flavanone 2-hydroxylase
(F2H), C-glycosylflavone biosynthesis (Os06t0102100-01)
Parent gene strand +
Alternative splicing Os06g0102100_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0102100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCACCGCGCCTTCGACCGCATCCTCGCCCGCCACGGGCCCCTCGTCTACCTCCGCCTCGGGCC
CTCCACGCACTGCcagcaagcgcggtcggctgcccccgagtcccatggcgctgcccatcatcgg
ccacctccacctcatccggccgccac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 154
Transcript exons: 163399-163552
CAGCAAGCGCGGTCGGCTGCCCCCGAGTCCCATGGCGCTGCCCATCATCGGCCACCTCCACCTC
ATCCGGCCGCCACCCCACCGCGCCTTCGACCGCATCCTCGCCCGCCACGGGCCCCTCGTCTACC
TCCGCCTCGGGCCCTCCACGCACTGC

Genomic sequence CAGCAAGCGCGGTCGGCTGCCCCCGAGTCCCATGGCGCTGCCCATCATCGGCCACCTCCACCTC
ATCCGGCCGCCACCCCACCGCGCCTTCGACCGCATCCTCGCCCGCCACGGGCCCCTCGTCTACC
TCCGCCTCGGGCCCTCCACGCACTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.317637338
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study