Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.009G248900_circ_g.1 |
| ID in PlantcircBase | gra_circ_000972 |
| Alias | Chr09:20117448|20121351 |
| Organism | Gossypium raimondii |
| Position | chrChr09: 20117448-20121351 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.009G248900 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.009G248900.1:5 Gorai.009G248900.2:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.093253505 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
20117451-20121348(+) 20117528-20118639(-) |
| Potential amino acid sequence |
MICHCKRPPDGNLGCGDECLNRMLNIECVQDTCPCGELCSNQQFQKRKYAKMMWDRFGRKGFGL RMLESISAGQFLIEYVGEVLDMQAYEARQKEYASRGQRHFYFMTLNGSEVIDAYVKGNLGRFIN HSCDPNCRTEKWMVNGEICIGLFALRDIKKIMICHCKRPPDGNLGCGDECLNRMLNIECVQDTC PCGELCSNQQFQKRKYAKMMWDRFGRKGFGLRMLESISAGQFLIEYVGEVLDMQAYEARQKEYA SRGQRHFYFMTLNGSEVIDAYVKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKIMI CHCKRPPDGNLGCGDECLNRMLNIECVQDTCPCGELCSNQQFQKRKYAKMMWDRFGRKGFGLRM LESISAGQFLIEYVGEVLDMQAYEARQKEYASRGQRHFYFMTLNGSEVIDAYVKGNLGRFINHS CDPNCRTEKWMVNGEICIGLFALRDIKKIMICHCKRPPDGNLGCGDECLNRMLNIECVQDTCPC GELCSNQQFQKRKYAKMMWDRFGRKGFGLRMLESISAGQFLIEYVGEVLDMQAYEARQKEYASR GQRHFYFMTLNGSEVIDAYVKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKK(+) MFSIRFRHSSPQPRLPSGGRLQWQIIIFFISLNANSPIQISPLTIHFSVRQFGSQLWLMKRPKF PLTYASITSLPFNVMK*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |