Detail information of orai.009G248900_circ_g.1


General Information
CircRNA Name orai.009G248900_circ_g.1
ID in PlantcircBase gra_circ_000972
Alias Chr09:20117448|20121351
Organism Gossypium raimondii
Position chrChr09: 20117448-20121351  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.009G248900
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Gorai.009G248900.1:5
Gorai.009G248900.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTAACCTTTGTATCCATTATTTTTGTCTTTTCTCTGAGCAGTGGATGGTTAATGGAGAAATT
TGTATTGGACTATTTGCATTGAGAGATATAAAGAAGataatgatttgccattgcaaacgacctc
ctgatggtaaccttggttgcggggatgaatgtctaaatcgaatgctgaacattgaatgtgttca
ggacacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATGATTTGCCATTGCAAACGACCTCCTGATGGTAACCTTGGTTGCGGGGATGAATGTCTAA
ATCGAATGCTGAACATTGAATGTGTTCAGGACACCTGTCCCTGCGGGGAGCTTTGCTCAAATCA
ACAGGTTCTTCCATTGTTTTTAGTAAATGAATTGTAGTACTCATTTTTTATGGTGGCTGTGTTA
CTAAGAGGATTTATTTTTTTCCTTTTAGCTTTTGAAGAGAATGATATTTTATTCCAAACATCTA
TTTTACAGTTCCAGAAGCGAAAATATGCAAAGATGATGTGGGACAGATTTGGTAGGAAAGGTTT
TGGTCTGAGGATGCTTGAGAGTATTTCTGCTGGCCAGTTTCTTATTGAATACGTTGGAGAGGTA
TCTAGATTTGCTTTATATTATTTTAATGTTTGTTGATCAGGAAGTAGCTGCCTTTTTGAAATTG
TTGTCAAATTCAAGTCTTGGCCATTTAAAATTATATTTTTGTATTTGTTAAAGCAAATGGTACA
TTTAATTTTGAGAAAACCCAGTCATATTTTGTTGAGGCTTCCACATCTTATGATGTGGTGCAGG
CCAAATCACCAAATATACTGTTAAAAGGGGCATGTTTAAAGCAATGTTCTGCTGTGTCATGGCT
AGTGAGTTGAGCATCATTATTTAGTTGATATGGTATCTGCAGTGTTTTAAGCAGTCAAGGTCTT
TGTCTTGTAAACATTCTTAATGGTGGGGATTAAGTATTCATGTTTTGGAGGAAGGATAATTTGG
TCCATCTAGTCAGTATATGCGTTGATTATTTAAAGTTGTATCTTATCATATGGTCTGTTGGTTT
TTTTTATTTATATGCTAGCGATTTCCCAAATTTAAAGACCAAGCAATTTAATCATTCCTCTTGT
AGTCAACTGAAAGCTTCTCGTGCTTTTCATGCATGTGAAAGTCACATTTGCCGAAGGTCACTTT
TGTCTAGGCCATATTAACCTTTTTGTTATAGTTTGCTTATTCCCTGTTGTTCGAGTATTTGGAG
TATATGAAGTTTAATATGCATATGGCATTACCTCTACGTTCTAGAAAATTTTTATTATATATAT
ATTTACCAATGCTGTTTCAATTATCTGGTTTATCAGGTGCTTGATATGCAAGCTTATGAGGCTC
GACAAAAGGAGTATGCTTCTAGGGGTCAGAGGCACTTCTATTTCATGACATTGAATGGCAGTGA
GGTTTACAATTTACCTTTCTCTAAATTTTATTTTTTAAATATTGTTGATACAAAATGTGGAGTC
TGGTAGTTGGGTGGTTCATACAGTGCATGTACAGAGAGCTGCTGATAATTGCCTTTAGGAGTAA
GAGATAGGTTCAGGTTGTTCGTTTTCTGGAAAAGAAAATTCCTCCATCTAACTGCAAGAGAGGT
TTCTATACCTTTTGGAACAAGTGTCCATCATAGAAAGCTTACAGGCCGAGTCGGTGTGGGCCTC
CTGCACTTATGTTTGGACGTGATCAGGTGGACAGGTGTCTCTCCCTCAAGTGTCTTTTAGTCTT
GTCCACTAGACAAATGGTGAGATGGGGATGAAGAGTTTGACTTTCTAGCAAAGTCACCCTGGCA
AGGTGGTCACAACCGCCAATAGATTTGACCAAGTGAGGTTCCTCTGACTGCGCAGGGTTAGAAT
CTCCAGCTATAACCCCGCTCAGTCTGATCGTTTGGTCAAACCTGTTAGCCGTCATGACACCTCG
CTAGAAAAACCCTGCTGTGACCAACTTGCGAGAGAGACCCCGCTAGAAAGCATAGAAGTTAATT
CCGTACCAGCCGGAATATTCTGTTCCGGTAAGAAACCAGGACACATCCAAAAGTTTTGTTTGCT
TCAGAATTCATTTGGTACAAGTTGTTTCACTTTGTTCCGGCCAATTTCGTCCATTCTGCTGGAA
TTTAGGGTACTGGGCAGTACCAAAATAGAAACTGTTTTTCTTTATGTTTTTCAGATTTGGAGAT
GACGAGGTTGGCTCTCGTTACTCACCATGTTTCATTTAAACTGTGATGAAAAATGACCATGCAT
CAGCAATCTTACCTGCCACGGATATAAGAGGAAGGAAAACAAAATAGAAGAGAAGGCAGGAGCT
ATGGCAAAAGTACGAAACCACACAATTAAATTAAGACAACCCTAGAAAAATATAGAAAGAATTG
GGCTGGGCTTTAAGAAGTAAGTGCCGAAATATTAGGCTAAAAATCCATCTACATAACTTAAAAT
TAATTTTAGCAAATAAAATAGTTCCAAATATATATATTTTTGTAAAATATAAGGAGAATCTTAT
TTATATAAAATACAAATGTATTATATTATCAATAAGTCTGAAACGGTACACTGAAATATATTGG
TACTGGTACATATATCAGTACTAGTCGAAAAACGGTATGTCCACCGGTACGGAATTGACTACCT
TGTTAGAAAGTCGATCTTTGTCTCACCATTTATCAAGTGGACAAGACTACACCATGCGTAATAA
AAGACATTTGAGGGAAAGACATCTCTCCCTATGATGGACACCTGTTCCAAGAGGTATAAAAACC
TTTCTTGTAGTTAGATGGAGGAAGGACTTTCCTTTTCCACAAAGAGGACAACCTGAACCTACCT
CTCCTACAGGCAACTATCAGTGGCTTTTTGCATGTCCATCATGTGAACCACCCTTAACTACCAG
ACTCCGCATTTGGTACTAACAAATATAATTTGCTATTGAATAGCTTGTGATTGCACAAAAGGCC
ATTGCAAATGAATAAAAATTTCAACTCTATCTCGCCTATTTGTTTTTGTTAATCATTTAACGCT
CAGTACAGGTTTGTTCACATATCAAGAAAAATTATTTTGTTGGTTATTATTATTTACCTAGTAG
ATTGTTTTCATGATTCTTGTAACTGGGCATACTTTGGAGAAAGGTGAGGTCCTTACTTGCTTTT
TTAGATTTGGCTTCCAATTTGCCGTTTATTTGCCCTTCAGCCCTGTGTTTGCTGCAGACTTGTA
ATTATCCATTCATCTTGAATGTGTTTTCGTAATTTTCTTTGTTTCTTCTGTATAACATTATAAT
TCATTCTGTTGTATGATTTTTCTGTCAATTATGCTTCTATGTTTCACTTTCGAGGAATTTTTTT
TCCATTTCTTCCAGGTAATAGATGCATATGTCAAAGGGAATTTGGGGCGCTTCATTAACCACAG
TTGTGATCCAAATTGCCGGACTGAAAAGGTAAATGGGATCCTTAAAATGTGACCATGGGCCTTT
TGTTATCATATCAGTTAATAAGATGAGATTGTTTTTTCTAATAGAAATAGATTAGATGGAATAC
TTACAAATAGCAGAATGATGGGATCTTTTGGTGAAGTGTCTGCTTTAATACCTTTGTAATCCAA
GCATACCTCCACTATATGGAACCCTTTTTCTAACTAAAATTTTGGTGGACAAGTTTATGTTAGA
GGTCACTCTTTGTAACTTTCTTCTGGACTTGATTAGCCAAATCTACTAGGTGTCCTAATCAACT
TTTTTCTTTATTCTTTTCTGGTGAGTTTGGGCTTCAAAATCTTGATATTACTAATATATTAATT
ATTAATGTGAAATATTGATTTTAAGCTTGCAATAAAGTTAGCTGCTTTGATTTGCTTTTTCACC
CACTGACTTATGCACCTTTGATATTGCCTACTATTTTGCGATTTATTTTGACTTTTTGGACATC
TATGTTCCATGAATATGAACATGGTTGTCTTGTTTTACTGAAATTTGCTTCTTAAATTATGCTT
CTTTAACATGTTCATTTCATTTCAAGAAGGTTAACCTTTGTATCCATTATTTTTGTCTTTTCTC
TGAGCAGTGGATGGTTAATGGAGAAATTTGTATTGGACTATTTGCATTGAGAGATATAAAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.093253505
Functional Information
Coding potential Y
Potential coding position 20117451-20121348(+)
20117528-20118639(-)
Potential amino acid sequence MICHCKRPPDGNLGCGDECLNRMLNIECVQDTCPCGELCSNQQFQKRKYAKMMWDRFGRKGFGL
RMLESISAGQFLIEYVGEVLDMQAYEARQKEYASRGQRHFYFMTLNGSEVIDAYVKGNLGRFIN
HSCDPNCRTEKWMVNGEICIGLFALRDIKKIMICHCKRPPDGNLGCGDECLNRMLNIECVQDTC
PCGELCSNQQFQKRKYAKMMWDRFGRKGFGLRMLESISAGQFLIEYVGEVLDMQAYEARQKEYA
SRGQRHFYFMTLNGSEVIDAYVKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKIMI
CHCKRPPDGNLGCGDECLNRMLNIECVQDTCPCGELCSNQQFQKRKYAKMMWDRFGRKGFGLRM
LESISAGQFLIEYVGEVLDMQAYEARQKEYASRGQRHFYFMTLNGSEVIDAYVKGNLGRFINHS
CDPNCRTEKWMVNGEICIGLFALRDIKKIMICHCKRPPDGNLGCGDECLNRMLNIECVQDTCPC
GELCSNQQFQKRKYAKMMWDRFGRKGFGLRMLESISAGQFLIEYVGEVLDMQAYEARQKEYASR
GQRHFYFMTLNGSEVIDAYVKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKK(+)
MFSIRFRHSSPQPRLPSGGRLQWQIIIFFISLNANSPIQISPLTIHFSVRQFGSQLWLMKRPKF
PLTYASITSLPFNVMK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b