Detail information of BGIOSGA034372_circ_g.2


General Information
CircRNA Name BGIOSGA034372_circ_g.2
ID in PlantcircBase osi_circ_009330
Alias Chr11:4502362_4504306(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 4230097-4232042  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA034372
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034372_circ_g.3 BGIOSGA034372_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034372-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTACAACAGCAGGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGC
AGCCAACAATTCTTCAAGGATTTCAGGAAGTATACCctttgctgatttggttctcaaggtagta
ttggggatctattggtatgttattatccaaaacataaataggatcttctgacctctcatatgcc
tacaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCTGATTTGGTTCTCAAGGTAGTATTGGGGATCTATTGGTATGTTATTATCCAAAACATA
AATAGGATCTTCTGACCTCTCATATGCCTACAAGAAGAAGTATTTCATCAAACTATCACCATCA
CAAGATAAATACATGACTCTGCAATTGAAAGTACATTCAAGTTTACCTTTGCCCCTTTTGCTGC
TTTGATTATAACATAAGGAACCCGGTCACCAACAGTAGGAGCAGTAGCAGCGTCCCTCTAACCA
AGGAAAAAACAGTCAGCAGCATCACTAAGTGTCTCCTATCTTGATCAGCAACATACAGAAAAAA
GACACAATGGCTCATACCTTTCGCATTCTCTCAGCAAGCTCCACATGGGCAGCTTTGACAGCAT
AATCCTCTCCTGTTTTAGTCAAACCCTGTACAACAAACAGTTAAAGATTTACAACACAGACAAC
ACAGAGGATTCAATCGTATTAAGTAGTGTGCGGATTCACCTTTGTTATAACTAGAAGAGATAAG
TCTACACGGTTCATTAGTAGATCAGAAATGGTGTTCTTGACATATTGAACTGCACCAGGAACAT
CTCTGTCCACTAGTATTTTATGAAGGCACTCAGTAACCAGGTTCTTTACTAATAAACAGTTGTC
CCTTCTCACTGTTTCAATACCTATAAGCAAAGTTAGAATCATGTTAAAGCAAGAAGGTAAGATG
ATATCTAAGACAAGACAAAAGAAAATACCTTTCGTGTCCATTTTGTCAAATTTCTCAGGATTTG
TCCAGTACAAACCAGCATATCTCTTCTTGCTAATCAGTAGATAAGGGAAATAGATCTTCTCAAA
CTCTAGCTTGATGGGCTGCAGGAAAGGTATCAACATAAATATGAGTTGAACTCAAAGTAACAAA
ATTGGAAAAAAAAATGGATACTGCAGATGCAAAATTAGAAAGGAAATGCAAAGGGCAAAATTAT
TACGACAAGTATCATTTCAGATGATTTTGAAACGGAGGGGCATTAATGTCAAATAACAGTTACC
ACAGTAGTTTATGAGTCACCTTAATAAATGTTCCACTAATGTAGTCTGCAGCTTCTCTTCCTAG
CTTCATTGCGTCCTCAACAGTAGAAACACCGAACTGTACCATTACAGAATCAGTATCTCCATAG
ATGACCTGTAATGCAAAAAACAAAGCATGAAAAGATAGAACATAAGCGAGAGGGCAGGCTAACC
AAACTCATATACCAATAACTAAAGAAACAAAAGATCATGCAGGCAGGGAAGAAAGTGATTATTG
TGCTGATGTCTGGCCACCAACTGCACAGTTTTAGGTTTTGTCAAACAGGAATATGGCCACTCAT
CATTCACCTCTGCATTGTGCTCATAGCCTCCAAGTGTCGTGAATTTATCTTCAACAAGCTTTTT
TGTATGTTCAATCATCTGTCGACCTGTTTGATAAATACATCAGTTTTATGCAATACAACATTTC
TCTTGTTAGCTAACTGTACAATGAATTTATTGATTCCAGAATTGATGCTCACCATAGCTGGTCA
CACTTGAAGAAATTTCTAAACAAGGTAATTGACCAACAGTCGCTCCAGTAAAACCATAGACAGA
GTTTGCGCTTATCTGAAACATAAACCATCCAACAATATCATGATTCAATGAGTGCACATTTGTG
TATCACTGATTTGAGGGAATTGGAGATAAAAAGGCTATGTAAATACTTTTAGGGCAAGCTGACG
ACCATCAAGAACGGCCCTTTCAAATGGATCCTTTGCTTCCTGAACAAGTAATTGGTGAATTTAG
CATAGGATGTAAATGTAACCTAAAGTGCAGAGGATTTTTATGTGCAATTGGCTCACTACAACAG
CAGGGGAGAAACAGAGAATGATACCTTCAAATCTGCTTTCGCCCTTTTCCGAGCAGCCAACAAT
TCTTCAAGGATTTCAGGAAGTATACC
Conservation Information
Conserved circRNAs osa_circ_008735
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021