Detail information of BGIOSGA011172_circ_igg.1


General Information
CircRNA Name BGIOSGA011172_circ_igg.1
ID in PlantcircBase osi_circ_014100
Alias Chr03:6989202_6994152(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 7446054-7451004  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCTTCTGCATATAATTACCACAGGTATACTTATCAGCTAGTACGATATCCTTCCTTTGGTCAG
AGTAAATGCATTTACACATCATACAACCGCATGTATccttgttgcatcctgggacgaggtcctg
cagaagcttcatcctttcgtttatcttctcccttcgaaactgcattcagatggtgaagctgtgt
gagcaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTTGCATCCTGGGACGAGGTCCTGCAGAAGCTTCATCCTTTCGTTTATCTTCTCCCTTCG
AAACTGCATTCAGATGGTGAAGCTGTGTGAGCAAGAAAATCTATACACAGAAAGATCTTCCATT
AATGTTGGAGAGATCAATTACTCTTTCTGCAAGGCTGTGGCTGTTGGTCGCCTGGCCGCGTTTT
GCCCGGACATGCACGTACTCCTCCCTGCTAGCGTCAGCATCACCCGCCTTCTCTCCGGCATGCT
CCATGCTGAGCTCTCTCTGAGGCATTTCACCGGTTTCCTCCTGCAGTAGTACGATTTTCACGAT
GAAACGTGCTCCCACCCGATGAAGCTAAGCAAAGAGAGCTTCTAATTAACTTGTTACTTGGGAA
TGTAGCGATGAACTGCCCTCGCCTGAGCCCTTCCTTTTACTGCCCTTCAAACACTTGTCAATGC
TCATGTTTCTACTTAGCTGAGTATCTGAGGAGTTGGAACACGGAAACTGTAATAGTTAGGAACT
TCACAAATTAAGAAACTGTGGTTATCTAATTGAAAAAAAAAGAGAGGAGGATACTGTGGTTATC
CTTGAAAATAGAACATAGGTAACGAGAGAGACATACCGCCGGTAGGATTGTAAAACTGAATCCC
CTCTTGCAAACTTGCATTATGCACAGGAAAAAGGATAGGCTCGTCGAAGTCCATGGCAAGGTCA
AGCGAAGCAAGCTGGTTAGCTCCGACCGCGAAACAATGCCCTTGGCTGCTTGCAGCAGCACTGC
AGGGAGGGGAATACATCTGCAGAAGAAACGATGATCAATCACATGATGACCATTATATCACAAC
TCTCTGAGATAAGTCATCTAGTGTGTACTAGATTAGATAGATGCTAGTTCCCAACTCCCAAGAA
CAAACATATGAAGAAATTAAACAAGCCACCAACCTTGTGCCTGATACTTGATCTCAGGGTGATA
TTGCAATCATTTTAAGAAATGCGTGATGGCCTTCTAAATTGTCAGTTTTGACAAGTGAATGGGC
TTTACTTAAAGGGTAGGGTAGATCGGGAGCTGTGGCAGTCAATTTCTTGCAAGGCTCAACAAGG
AACAACTAACCCTTGCAGCCTTACATAAAGATTGTCCAAAGTGAAAAGTTAAGTAAGCCTAATG
CAATAGACAAACGCAAGGGCAAAGGTGGAAACCACAGTCCTGGAATAGAATTGTCGGTACTGCT
AACAACCATGCACCAGCTGGATCACATCCATGAATCAGAATAAAATTCTCTGAATTAAGATAAA
TTGCAGGTGGTACTGTAAAATGAAGACCAAACCAAAGAACAGATGCTATTGTCATCCACTGTAT
GGGCCAGCCCAGAATAAGGTTAATGATTAATTAATGAACCAGATCCATCTTTGCTTAAAGCCTT
AAACCCTCTTAAATTTTGTACTACTGGATTAATACCCTTCTTCACCATTTTTTTCTGATAAACC
CAACTTACAAGTTTTTAGTTTCAAAGTCTTATTCTTAACATGTTCAACAATTCTTGCATAAGAG
GAGAAAAGGGAACCCACCTTTCAGTGGCAGTGCCTAGATGTAAGGCGTCGTTTCAAGTGTGGTA
ATTAATGTTACAGACTAAACCTTAGTCCTCTCTTTTTAATTTGTAATTAAACGAAATCTCCAAC
ACAAAGACTCAGATTGCGTATTCACTGGGGTGGATGTGAGGCTAGAGGTAACAAGGACAGAAGG
TTAGTTGTTACACAGTTCAAACTGTCGCTCTGAAATCTGAATGGAAATGTCAGAAGTTCGTTCT
GTAGAATCAGATCCACAGAACAACAAAGAAAGCAACAGCTAAGAATGTGCAAAGCTTCGATGAA
ATCATCAGAGAAACCAGGGAAGTGATTAGGTTCTATGATCGATAAAAGTTAAAAAGAGAGCTGA
TTGTTATCAGTAGCAAAGCAGAGGGATTCTTCGGCTCTCAACAGTGAGTATCGTACATACCATC
ATCCGAATTTGGTGCTGGCACTGTAAATGATCTGTCAAGCACGACAATGACTGCCCGATTTTAC
ACAGGCTGTCGACACTTCGTACTACTCACCAATTCAGAGCTTCTACCATGACAGTTTAAGGGCT
ATCTCGAAATTCAGAAGGGAGAAATTGATTGATCCCAGATGCAAGGACAAGGGTTAGTACAACG
TTGAAACTTCTCCCCTTTCTTTAATGTGTAGATTGAGGAGAGGCAAAAGGACTTGGATGGAGCA
CAGAAACCGTTCAGTAAAAAGGCTGTTGGCACTTAATGAGCAAACAGCTAATAATGTTCTTGTG
CTGTAGTTTCATCAAGGGAAAAAACAATGCACTGTCTACAAAGAAACTATTCTGCCAAAATGCA
TAAAATTGATGTAGAAAATATTGAACAAGATATATATTTAGGATGGAAGGGGAGAGTTCTTATT
ACCAGTCGGGGGTGAGGGCTGCTGCCACTTTCTCTGCTCCACCTCTCTTGATCAGAGGTGTTAG
TTACTCACCAGCCTATGGTAGAACGAATAGTGTTCACCATGTAATGGCTGCATGCAGAGACATG
TGGCTAGGACAGGAGGGGTGAAATAAAAGATACTAGAAGGCCACCACTGCTGCTTCCACCAGCT
TCCCAGTGTCTTTATTTGATTACACCTCGGTGTAAGCATAGCAGAAGTACAACTTCCCTTCATG
AAGAAGACTAGTTGCACATTTGCAGATTTCAATTGCCACAAGATTATCCTATCCACCTTGGCTT
AAAAATCGGTCCTGGTTAGGCCTTCTCCAACAAGCAATACCTGTTAGTATATTACTTGTGTTGC
ATAAGGATAAGGTCCAGCATGCTACTAGTAGCAGATGAGAGAGCAAAAGGCAAAGCTCAAAGCA
GGGTGCCCAAGTGTCAATCATAGCAGTTCATCACTGTGCTGTTTCACTTCAAGAGGCTTTGGAA
TCTGGAGTACATTGCCACCATCTTTTGCTGATGCTGAAGCTTGAGTTGTTGAGCAGCAGGCACC
AGCAGATGGGGGAAGCTGGTAAGGATTGATTGGCAGTGGAATAATACAGTCAAAGTGAATGCCT
GCTGCAGGAGCATCCTGCCAGCGGCAGGCAGACGTGTGTTGGCAGCGAATTGGATTCTTGTACT
TACTCCGCTGAGGCTGCCTGTAGCCTGTGCAGTATCAGCCAGCTATCTGTAGGAGTACTATTGT
TCCGAGGCTAACAGAACTGGATGCGTGAATTGAGCTGGGTCGCTGGGATGCAGTATCGCTTCAG
GTCCTCCACTGCAATGCAATAGCCTTTCAATAATAGCACAGGCTGAGAACGTAAAACATACTGT
ATGCAGGACAAAGTTGAATGTGAAACAGAAGAATTCGGGTTTACAGGACTATTGGTAAAAGGAA
CAATGAGGAAAATATATAAGGCTGCGTATGAACGGTAGTTGCCACATAACTGAAACTCAAATGC
TGTATTTGGCACGGAACTGAAACTAAATACTTTTCATAGAGCAGCCAAAGTTCATGGAACCAGA
GAGTAACGTTTAACCATAATTTAGATCACCAATCATAGCATTGAGATATCCTGGCAGTAAAACA
CTCAAATTCTTACCCATTTGGATTTATAAACTCTTTCTTCCCATACTCCTTCCCCCACAATCTT
TTCAGTGCACCAAGCCACAAGCAAAGAGTACTCCCCTTACTGAAAGTTGTAGCTTTTCTTGGAC
TCCGTGACACTCCGTACAGCTCCCATTTGAGTATCGTAACGGTGGTTCAGTCTCAGTCCAAAGA
GAAGTGATCAAAAAGTTAAATCTCATGAAAGATATTTCATGGTTTAATTATGCAACATAAAGAC
AGATGAGTCCAATAGTCAATAGAACATGTGTAGGCAAAGTAGATAGATGCACGCCTACACCAAA
AAAGTGATATTTCTCCCTGCGGTCAATATAAAGCCCACTTTAAGAAAATGGAGCAATCTTTGGC
CCCCCAGGTCTAAGACTCCAATGGACTATGGAGAGAGAAGAGCTATATGGTTCACTCAACCATC
ATAGCCTCAAGAAAAATATGGTATGGGAACATCAATGTCGAGTTGCTTCAGAAGTCCATGAAAA
ACCATTATTGATTGTTATATATCGTTTTACAAAGAAACTATCCATTTTTGCCTCTAGTCATAAC
TCAAATATCTCAAAGGTTCAGGCGTTCAGCTGATTATATATGTATAGTGAGAAATGTTGATAAT
TCAAGTAGTGACTGCAGTGTAAATGTGAAGCTTCTGTATAAAATCAAGAACTTTATTGTCATAT
AGATCCTGCAACCCATATTCACTTAGGACAAAAGACTAAAATCTCTTAAAAAATTATACCTGAA
CCAAATCAACCAAATGATACCACAGCAAACTCAACCCAATAGTGATGTACTGGCAAAGTAGGGA
ATGGTAGACTAATATAATAAGCCACCTATTGCGAAGGAAAAATAAAAGTAAAAGCAAATACTAC
AGTCAGATTCATAAAGTGGTGCATCGACAACCAAGAAAATAAACCATATTCGTAAGTCGAAGTG
AAAAAAAAAAGGATGACTCCTTTATTCTCCTTTATCATAAAACAAGTACGCGCAACCAAAAATG
GATATGTTAGGAGGAAGCATCAGTTGGAGAAATCCAATTGAGATGCAAGCCACGAGAATATTGA
CGATCTGCGAAACATTGTACAAAATAAAGTAACAGACAAACACAAAAAGGACACAAAGGGAATA
AGAAATTAACTTAGGCATGCAGGTAACATAACAACTATTCAGAATATTTCTAGAAAGAAATAAA
TAGTTCCCCAGAGTGCTTATATATATTACTCACCTACCAGGTTGTGAGACGGGCTTCTGCATAT
AATTACCACAGGTATACTTATCAGCTAGTACGATATCCTTCCTTTGGTCAGAGTAAATGCATTT
ACACATCATACAACCGCATGTAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021