Detail information of Zm00001d019262_circ_g.1


General Information
CircRNA Name Zm00001d019262_circ_g.1
ID in PlantcircBase zma_circ_009246
Alias zma_circ_0002703
Organism Zea mays
Position chr7: 24655817-24658785  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d019262
Parent gene annotation Proteasome subunit beta type
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d019262_T004:8
Zm00001d019262_T003:7
Zm00001d019262_T001:8
Zm00001d019262_T002:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGAGTTTGAGCCCGTTCTTCTCCAGCATACTGTTGCGGCGGCACAGGTCGAAGCTGAACCCGC
CCTTGGCCGGGAGATCCATTGAGCACGTCATCCTTCctggatgcaagcatacaggatcactcct
ccatagcatcaccgccctcagtgacctcaaccttctgcttgagatgtgtgatctttgcggacaa
cacctctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 847
Transcript exons: 24655817-24655913,24655998-24656088,24656534-24656632,24
656773-24656877,24656955-24657024,24657103-24657199,2465
7292-24657433,24658640-24658785
CTGGATGCAAGCATACAGGATCACTCCTCCATAGCATCACCGCCCTCAGTGACCTCAACCTTCT
GCTTGAGATGTGTGATCTTTGCGGACAACACCTCAGTCTGCCCCTTGGTGAAGCTATATCCCTT
TGAACTAACATAAGTTCTGGGATTCGGCAACTGGTGGTTTCTCAAGTATTCTGTCTTCCCCTTG
GTTATCACGCAGACATCCACATTGCTTCCACTACCCAAGTCATTGAAGATACCTGCACATATTG
CTTCTGACACCAGTTGTATTCCCTCTTCCCTAGTGAGGCCCTCTTTATACTTCGATTCAAACAC
TGACATTGCAGCAAGGGATCCAGAACCCATCGTGGCAAAAGGAAGAGTATCAGTGGAGCCGTGT
GGATAAACAGTGTGAAGATGCGGTCCAGTACAATCCACTCCACCAAGAACAAGGGCAGCACTGA
CATGGCCTTGATACCTAAAGAGATGTGACTTCAGCAGTGTAAGAGCAGTTACGACTCTAGATTC
GCGACCCGTTGCGTAACGGTGCAGCTGTAGCTGCGAGCTGACCATGTCTGTAACAGCCTCAGTG
TCAGCAGCAGTTCCTGCTCCACAACAATAAATGTTTGGCGCCATAAAGTGGATCTTCTCACAAT
TCTTATCAGCAACTATAGGCCCCTCAGTTGCTCTTGTGTCTGCCCCAAGAACAACCCCATCCTG
AAAGACGAGGCCGACGATGGTTGTTCCGGTCTTCCTGAATCCCGGGAGTTTGAGCCCGTTCTTC
TCCAGCATACTGTTGCGGCGGCACAGGTCGAAGCTGAACCCGCCCTTGGCCGGGAGATCCATTG
AGCACGTCATCCTTC

Genomic sequence CTGGATGCAAGCATACAGGATCACTCCTCCATAGCATCACCGCCCTCAGTGACCTCAACCTTCT
GCTTGAGATGTGTGATCTTTGCGGACAACACCTCTGAAAAGAACAGGATCATGCATTTACTTTA
TATATTATTCAATATGCCATATCATGTATAACATTCGTTAGCATGGAACTCACCAGTCTGCCCC
TTGGTGAAGCTATATCCCTTTGAACTAACATAAGTTCTGGGATTCGGCAACTGGTGGTTTCTCA
AGTATTCTGTCTTCCCCTGGTAATGTAGGAATATGTCAGCAGAGCACTTTAAAAGGTTGTATTT
CATGTTTTTTCAATTTTCTCAAAGGCATCCATGGAAAATAGTAGGATGCAGAGTACAGTTTACT
CAAATGAGCATTAGTGGAAATTAGTGATCAGAATTCAGTAGTGTAAATCAAACCATGTGCAAGT
GTGACATATACCAAATCAAGTTCGATAAATATAATGATGTGTAGATAATTTGAAAGTTCATTCT
CTAATAAGCAAACAATACATCTGGTAGCATCAGTTCTTGTTCTACATTTGCTTGAAAAGTTTGC
TTGGGTCTCTCTGTTTGTGTTGTGAGGTTAACCTATGTCCCCTCTAAATTTTTGTATACGCTTG
TTACTTTGGTTCCATTGTAATGGATCTGGGACAGAGTTTGGCCCTGGAACTACAAAATAAAAAC
ATAAAACACGTACCTTGGTTATCACGCAGACATCCACATTGCTTCCACTACCCAAGTCATTGAA
GATACCTGCACATATTGCTTCTGACACCAGTTGTATTCCCTCTTCCCTCTAGAATATATAAAGA
AATTTAATATCAAACTTTTATAAATCAAAACAAACACCATCAAATGTAAGTTCAGTCACCACAG
AAGACAATACTGTATTGCTAACATAGGTAAATGCAGGAACTACTGCTCTGGTCCACTTACAGTG
AGGCCCTCTTTATACTTCGATTCAAACACTGACATTGCAGCAAGGGATCCAGAACCCATCGTGG
CAAAAGGAAGAGTATCAGTGGAGCCGTGTGGATAAACCTGCACATCCAAAGTTAATGCAGCTAC
CCTAAATTACAGTTACATCAAGTAACAAATAGGTATACTCAGTTACTAACAGTGTGAAGATGCG
GTCCAGTACAATCCACTCCACCAAGAACAAGGGCAGCACTGACATGGCCTTGATACCTAAACAT
AATGGCATAAGCAGGTCAGACGTTGACACGATGACAAAGAGTTGTAAACGTGCCTATGAAGGGA
ACTCACCTAAAGAGATGTGACTTCAGCAGTGTAAGAGCAGTTACGACTCTAGATTCGCGACCCG
TTGCGTAACGGTGCAGCTGTAGCTGCGAGCTGACCATGTCTGAAGTGAAGGAAGGAAATGTCAG
TAAGGAATTCAACGGGAAAAACAGAAGACTGAAACAACAGTAAGATTTCATTGGTGTGGTCATC
TACCTGTAACAGCCTCAGTGTCAGCAGCAGTTCCTGCTCCACAACAATAAATGTTTGGCGCCAT
AAAGTGGATCTTCTCACAATTCTTATCAGCAACTATAGGCCCCTCAGTTGCTCTTGTGTCTGCC
CCAAGAACAACCCCATCCTATATAAAAGCATGGTTTAGTCAAATGGTAACCTCAATGGATATGG
CATATGAAACAATCTCCGTTCAATCGTGATGCAAGGTCTTTCATGTATTAGCATTGAATAAGAG
CACCAGTGTATATACTAATTTTTTTATATAAAGTTATGACAAAATTGCTATCATCCATTGGATT
TATTCAATCACAAGTTGATGCAAATCAGGATCAGAAATAATTGTCAGATAATCATTTTCATAGT
ATTTTTCACTGGGATTAAGGAATATTATGTACACATTTTCCCCTTGGATAATACAACAGAAACC
ATTTTTCACCTAAACAGTCGTTTAGCCCGTTTAAACACTATGTAAACGCTACACGGTAGTATGT
TGTTTCGTCTAATTGCCCGTTTAGCCCGTTTAATTGTCCATGTAGCCCATTTAATGGTCTGTTT
AGCCCAAATTATGGCTAAACGGTAGGTGACCAACTGTTTACCGTTTAACGTTCAGGAAAACACT
AATGGAAACCAACATAACAAAAAGATGGGGTTTTCACCACTAGGATGGTAGTTTGCGCTGAACA
TTTTCCCAGTTTGTACCATTAGCACAAACAACAATGCGTCATTGCGCGAGAGGAAGTTAAACAA
GCAATTGATATCAGAAAGTTTTCCAATGTTTAGTTGAGATGCTTGCCACCCTAAAGAGATTTCC
AAACCTAACTAACATTAAGAAACAACAGCACTAGGCTGATGCCTACAAAATTCACAAACACAGT
AAAATTGTCGAAGATCTAGAGATATTTCATCTATTACAAATGGCACACATAGTAAAAATTGTTA
AATAATTGTTAAGGTGCAATTAGTATCATACTATCATCCATTGGATTGGACGAAAGAATGTGGG
TTTGGACCCCTACGAGGGTGGTTTCCACTTTCCACAGAACATTTCACTGATTTGCATCATATAG
CACAATGTAAGCACATGCAACAGGTTGCCACGTTGGTACGCATGAGGTTGACATCGGACAGACT
TCTTTTCTAGGTTCCATCGATCTGCTTGGCAGTTGGCACCCTAAAAAGCAGTTTGTAAACCTAA
AAAACATGAACAAACGGCAGCACAAAGTTCAAGCCGCCCAAATTCGCAGAAACGGGTACCACTG
GACCAGCAGAAGACATACATTGTAATTACCGGATAACGAAAAGGCGACGCAACAAGTGTAGGCG
GTCGCACCTGAAAGACGAGGCCGACGATGGTTGTTCCGGTCTTCCTGAATCCCGGGAGTTTGAG
CCCGTTCTTCTCCAGCATACTGTTGCGGCGGCACAGGTCGAAGCTGAACCCGCCCTTGGCCGGG
AGATCCATTGAGCACGTCATCCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.150733904
Functional Information
Coding potential Y
Potential coding position 24658660-24656028(+)
24656041-24655839(-)
24655832-24657398(-)
Potential amino acid sequence MVVPVFLNPGSLSPFFSSILLRRHRSKLNPPLAGRSIEHVILPGCKHTGSLLHSITALSDLNLL
LEMCDLCGQHLSLPLGEAISL*(+)
MLVQRDIASPRGRLRCCPQRSHISSRRLRSLRAVMLWRSDPVCLHPGRMTCSMDLPAKGGFSFD
LCRRNSMLEKNGLKLPGFRKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHFMAPNIY
CCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTALTLLKSHLFRYQGHVSAALVLGGVDCT
GPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVSEAICAGIFNDLGSG
SNVDVCVITKGKTEYLRNHQLPNPRTYVSSKGYSFTKGQTEVLSAKITHLKQKVEVTEGGDAME
E*(-)
MLASRKDDVLNGSPGQGRVQLRPVPPQQYAGEERAQTPGIQEDRNNHRRPRLSGWGCSWGRHKS
N*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b